Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_016082.1 Length=2621 Score E Sequences producing significant alignments: (Bits) Value seq13 168 1e-38 seq11 152 9e-34 seq16 147 4e-32 >seq13 Length=197258317 Score = 168 bits (186), Expect = 1e-38 Identities = 269/377 (71%), Gaps = 18/377 (5%) Strand=Plus/Plus Query 1546 AACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACAGGCT 1605 |||| | || || ||||| || | ||||| ||| || || ||||| | || |||| Sbjct 89851193 AACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCT 89851252 Query 1606 TACCGTATTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCT 1665 | |||||||||| || |||||||||| || ||| || || | || ||||||||||||| Sbjct 89851253 TGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCT 89851312 Query 1666 TTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACCGCGTTTGAAT 1725 | | || ||||| |||| | |||||| |||| ||| || || || ||||||| Sbjct 89851313 TGA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGA 89851366 Query 1726 AGACTCGACC--ATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACG 1783 ||||| | |||| ||||| || |||| | ||||||||| || || | | Sbjct 89851367 AGACTTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCT 89851426 Query 1784 TGCCCACATCGTCTTCCCTGTTCTTGAATCACCTTCTACTATGA--GACTTAATGGTCT- 1840 ||||||||| || || ||||| || ||||||| ||||| || | ||||| |||||| Sbjct 89851427 TGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTC 89851484 Query 1841 ATCTGGCCGCGCAGCGGAACCCCTA--CCAAAATACTCATCGGCCCATTCTTGCATCTCG 1898 ||| ||||||||||||| | || ||||| || ||| ||||||| ||||| || Sbjct 89851485 ATC-GGCCGCGCAGCGG--CTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCT 89851541 Query 1899 TCCGGAACGTTAGTGAA 1915 || || || |||||||| Sbjct 89851542 TCTGGTACATTAGTGAA 89851558 Score = 102 bits (112), Expect = 1e-18 Identities = 174/249 (70%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 1669 GCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACCGCGTTTGAATAGA 1728 |||| | ||||| |||| | |||||| |||| ||| || || | |||||| ||| Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1729 CTCGACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCC 1788 || |||| ||||| || |||| | ||||||||| || | | | ||||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1789 ACATCGTCTTCCCTGTTCTTGAATCACCTTCTACTATGA--GACTTAATGGTCTATCTGG 1846 |||| || || |||||||| |||| |||||||| || | ||||| |||||| | || Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACTT--TGGTCTCACCGG 172134059 Query 1847 CCGCGCAGCGGAACCCCTACCAAAATACTCATCGGCCCATTCTTGCATCTCGTCCGGAAC 1906 ||| ||||||| ||||||| || ||| ||||||||||||| || || | || Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 1907 GTTAGTGAA 1915 |||||||| Sbjct 172134120 ATTAGTGAA 172134128 >seq11 Length=168460249 Score = 152 bits (168), Expect = 9e-34 Identities = 261/373 (70%), Gaps = 12/373 (3%) Strand=Plus/Minus Query 1546 AACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACAGGCT 1605 ||||| | || || ||||| |||| ||||| ||| || || ||||| | || |||| Sbjct 165527611 AACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCT 165527552 Query 1606 TACCGTATTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCT 1665 | ||||||||||| | |||||||||| | ||| || || | || |||||||||||| Sbjct 165527551 TGCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCA 165527492 Query 1666 TTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACCGCGTTTGAAT 1725 | | || ||||| |||| | |||||| |||| ||| || || | |||||| Sbjct 165527491 TGA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGA 165527438 Query 1726 AGACTCGACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTG 1785 ||||| ||| ||||| || |||| | ||||||||| || || | | || Sbjct 165527437 AGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTG 165527378 Query 1786 CCCACATCGTCTTCCCTGTTCTTGAATCACCTTCTACTAT--GAGACTTAATGGTCT-AT 1842 ||||||| || || | ||| || |||| ||||| || || ||||| |||||| || Sbjct 165527377 CCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCAT 165527320 Query 1843 CTGGCCGCGCAGCGGAACCCCTACCAAAATACTCATCGGCCCATTCTTGCATCTCGTCCG 1902 | ||||||||||||| |||||| || ||| ||||||||||||| || || | Sbjct 165527319 C-GGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTG 165527261 Query 1903 GAACGTTAGTGAA 1915 | || |||||||| Sbjct 165527260 GTACATTAGTGAA 165527248 >seq16 Length=188620566 Score = 147 bits (162), Expect = 4e-32 Identities = 235/336 (70%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1588 CTTTAATTTGAACAGGCTTACCGTATTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCA 1647 |||| || ||||| || || | ||| ||||| |||| ||||| ||| |||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1648 GCAATTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTAT 1707 | ||||| |||||||| |||| | |||| || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1708 ACTCCACCGCGTTTGAATAGACTCGACCATTGAAGTCCAGGTGTCCACTGAGATAGTTAT 1767 | ||||| |||| || | || | ||| ||||| | | ||||| | ||| |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1768 GTGGGCCTAACGCACGTGCCCACATCGTCTTCCCTGTTCTTGAATCACCTTCTACTATGA 1827 || || || | | ||||||||| ||||| || ||||||||||||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1828 --GACTTAATGGTCTATCTGGCCGCGCAGCGGAACCCCTACCAAAATACTCATCGGCCCA 1885 |||| | ||||| ||| || | |||| | |||||| ||||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1886 TTCTTGCATCTCGTCCGGAACGTTAGTGAATGAGGA 1921 || |||||| | | || ||||| ||||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8278265600176