Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_016573.1 Length=2678 Score E Sequences producing significant alignments: (Bits) Value seq16 147 4e-32 seq13 136 7e-29 seq11 132 8e-28 >seq16 Length=188620566 Score = 147 bits (162), Expect = 4e-32 Identities = 337/497 (68%), Gaps = 24/497 (5%) Strand=Plus/Minus Query 1657 GGCTTGCCGTACTTGCAATTTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAG 1716 || || | ||||||||| |||| ||||| ||| |||| ||||||| |||||||||||| Sbjct 2249319 GGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAAGTAATTCCTTCCAG 2249260 Query 1717 TGCTTT-AGCTTTAGGTAATGGGGTGTGACATCATCGATGACGTTATACTCAGCTTCGTC 1775 || ||| | | || || |||| | || | ||| || |||||||| || | |||| Sbjct 2249259 TGTTTTAAACATT--GT----GGGT-TAACGTTATCAATAACGTTATATTCCACATCGTT 2249207 Query 1776 TGAGTAGACCCGGGAATTGAAATCTAGATGGCCGCTTAAGTAATTATGTGGGCCTAATGC 1835 ||| | ||| | ||| || |||| || || ||||| ||||||||| || |||| Sbjct 2249206 AGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTCCCAATGA 2249147 Query 1836 ACGAGCCCACATCGTCTTGCCCGTTCGAGAGTCACCCTCAACAATTA--AACTTATGGGC 1893 | |||||||| ||||| || |||| || ||||| |||| |||| ||| | || Sbjct 2249146 TCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACTGA--GGT 2249089 Query 1894 CTCTCTGGCCGCGCAGCGGAACCTCTC----CCAAAATAATCATCGGCCCACTCTTGCAT 1949 ||| ||| || | |||| || || |||||||||||| ||||| | |||||| Sbjct 2249088 CTCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTGCCCATTTTTGCAT 2249033 Query 1950 CTCGTCTGGCACGTTAGTGAAGGAGGAGAGGTGAAACGGAGGAGCCCACGGTTCCGGAGC 2009 | | ||| ||||| ||||| || || | | | ||| |||| || || | || Sbjct 2249032 AACTTGTGGTACGTTCGTGAAAGAAGACACGGCGTATGGACTTACCCATGGAGCCTGTGC 2248973 Query 2010 CTTTTGAAAAATGCGAGAAGCATTTG-CTACCAAG-TTATGATGTTGAAGGAAGAAGTGC 2067 |||||||| | | || ||| | |||| || || | || || ||||| Sbjct 2248972 TGGTTGAAAAA--CCGTATCCAGTTGTGCATCAAGCTTTTGGAAATTAAAGAGGAAGTAT 2248915 Query 2068 TGTGGTTGCTCTTCTTTGATTATTTGTAATGCTTCTTCTGCTGAACCGGCGTTCAATGCC 2127 | ||| |||||||| || || |||||||||||| | | |||| ||| ||| | ||| Sbjct 2248914 TTTGGCTGCTCTTCCTTCATGATTTGTAATGCTGACTGTTTTGAATCGGAGTTTATAGCC 2248855 Query 2128 TTGGCATATGTGTCGTT 2144 || | |||| ||||| Sbjct 2248854 TTTGTGTATGACTCGTT 2248838 >seq13 Length=197258317 Score = 136 bits (150), Expect = 7e-29 Identities = 253/369 (69%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 1607 CTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATCTTTCTTGGCTTGCCGT 1666 |||| || ||||| || | ||||| ||| || || ||||| | ||||||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1667 ACTTGCAATTTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCT 1726 | ||||| || |||||||| | || |||||| ||||| || || ||||||| ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1727 TTAGGTAATGGGGTGTGACATCATCGATGACGTTATACTCAGCTTCGTCTGAGTAGAC-- 1784 | | ||| || |||| | |||||||||| ||| || ||| | |||| |||| |||| Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1785 CCGGGAATTGAAATCTAGATGGCCGCTTAAGTAATTATGTGGGCCTAATGCACGAGCCCA 1844 |||| || | ||| || | || ||| |||||| || || | | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1845 CATCGTCTTGCCCGTTCGAGAGTCACCCTCAACAATTA--AACTTATGGGCCTCTCTGGC 1902 ||| || || || || | || |||| || | |||| ||| | || ||| ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1903 CGCGCAGCGGAACCTCTCCCAAAATAATCATCGGCCCACTCTTGCATCTCGTCTGGCACG 1962 |||||||||| | ||||| || ||| ||||| | ||||| || ||||| || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1963 TTAGTGAAG 1971 ||||||||| Sbjct 89851551 TTAGTGAAG 89851559 >seq11 Length=168460249 Score = 132 bits (146), Expect = 8e-28 Identities = 253/371 (68%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 1603 CCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATCTTTCTTGGCTTG 1662 ||| |||| || ||||| |||| ||||| ||| || || ||||| | ||||||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1663 CCGTACTTGCAATTTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTT 1722 ||||| ||||| | |||||||| | | |||||| ||||| || || ||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1723 AGCTTTAGGTAATGGGGTGTGACATCATCGATGACGTTATACTCAGCTTCGTCTGAGTAG 1782 || | | ||| || |||| | |||||||||| ||| || ||||| | || |||| || Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1783 ACCCGGGAATTGAAATCTAGATGGCCGCTTAAGTAATTATGTGGGCCTAATGCACGAGCC 1842 || ||| || | ||| || | || ||| |||||| || || | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1843 CACATCGTCTTGCCCGTTCGAGAGTCACCCTCAACAAT--TAAACTTATGGGCCTCTCTG 1900 ||||| || |||| || | || | ||| | | || | ||| | || ||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1901 GCCGCGCAGCGGAACCTCTCCCAAAATAATCATCGGCCCACTCTTGCATCTCGTCTGGCA 1960 |||||||||||| | ||||| || ||| ||||| ||||||| || ||||| | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1961 CGTTAGTGAAG 1971 | ||||||||| Sbjct 165527257 CATTAGTGAAG 165527247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8460662638912