Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_016574.1 Length=2649 Score E Sequences producing significant alignments: (Bits) Value seq16 176 8e-41 seq13 168 1e-38 seq11 156 7e-35 >seq16 Length=188620566 Score = 176 bits (194), Expect = 8e-41 Identities = 245/339 (72%), Gaps = 16/339 (5%) Strand=Plus/Minus Query 1631 CTTTAATTTGAACAGGCTTGCCGTACTTGCAATTGGACTGCCAATCTTTTTGAGCACCAA 1690 |||| || ||||| || || | ||||||||| || | ||||| ||| |||| ||||||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1691 TCAATTCCTTCCAGTGCTTTAGCTTTAGGTATTGCGGGCTGACATCATCGATGACGTTAT 1750 |||||||||||||| |||| |||| ||| | || | ||| || ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAAC------ATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1751 ACTCAACTTGATTTGAGTAGACCCGGGAATTGAAATCTAAATGGCCACTCAAGTAATTAT 1810 | || || | || ||| | ||| | ||| || ||||||| ||||| || ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1811 GTGGGCCTAATGCTCTAGCCCACATCGTCTTACCAGTTCGAGAATCACCTTCAACTATTA 1870 || || |||| ||| |||||||| ||||| || |||| ||||||||||||| ||||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1871 T--ACTTATGGGCCTAACAGGCCGCGCAGCGGAACT-TC--TTCCAAAATAATCATCCGC 1925 | ||| | || || | || || | |||| || || | |||||||||||| || Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCG---CTGTCGGATGAAAAATAATCATCTGC 2249045 Query 1926 CCACTCTTGCATCTCTTCAGGAACGTTAGTGAACGATGA 1964 ||| | |||||| ||| || ||||| ||||| || || Sbjct 2249044 CCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 168 bits (186), Expect = 1e-38 Identities = 262/370 (71%), Gaps = 16/370 (4%) Strand=Plus/Plus Query 1595 CTCCAGGATTGCATAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGT 1654 |||| || |||||||| | ||||| ||| || || ||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1655 ACTTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCT 1714 | ||||| || |||||||||| || |||||| ||||| || || ||||||| ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1715 TTAGGTATTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGAC-- 1772 | | |||||| || | |||||||||| ||| || ||||| | |||||| |||| Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1773 CCGGGAATTGAAATCTAAATGGCCACTCAAGTAATTATGTGGGCCTAATGCTCTAGCCCA 1832 |||| || | ||| |||| | ||| |||||| || || | ||| ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1833 CATCGTCTTACCAGTTCGAGAATCACCTTCAACTATTAT--ACTTATGGGCCTAACAGGC 1890 ||| || ||||| || | ||||||| ||| | ||||| ||| | || || | ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1891 CGCGCAGCGGAACTTCT--TCCAAAATAATCATCCGCCCACTCTTGCATCTCTTCAGGAA 1948 |||||||||| ||| | |||||| || ||| ||||| | ||||| ||||| || | Sbjct 89851491 CGCGCAGCGG--CTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTA 89851548 Query 1949 CGTTAGTGAA 1958 | |||||||| Sbjct 89851549 CATTAGTGAA 89851558 >seq11 Length=168460249 Score = 156 bits (172), Expect = 7e-35 Identities = 324/475 (68%), Gaps = 17/475 (4%) Strand=Plus/Minus Query 1591 CCCTCTCCAGGATTGCATAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTG 1650 ||| |||| || |||||||||| ||||| ||| || || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1651 CCGTACTTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTT 1710 ||||| ||||| | |||||||||| | |||||| ||||| || || ||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1711 AGCTTTAGGTATTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAG 1770 || | | |||||| || | |||||||||| ||| || ||| | | |||||| || Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1771 ACCCGGGAATTGAAATCTAAATGGCCACTCAAGTAATTATGTGGGCCTAATGCTCTAGCC 1830 || ||| || | ||| |||| | ||| |||||| || || | ||| ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1831 CACATCGTCTTACCAGTTCGAGAATCACCTTCAACTATTAT--ACTTATGGGCCTAACAG 1888 ||||| || || | || | |||| ||||| | ||| | ||| | || || | | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1889 GCCGCGCAGCGGAACTTCT--TCCAAAATAATCATCCGCCCACTCTTGCATCTCTTCAGG 1946 |||||||||||| ||| | ||||| || ||| ||||| ||||||| ||||| || Sbjct 165527317 GCCGCGCAGCGG--CTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGG 165527260 Query 1947 AACGTTAGTGAACGATGAGAGGGGAAACGGAGGAGCCCATGGTTCCGGAGCCCTCTTAAA 2006 || |||||||| ||| | || || ||| ||||||| | | || | | | | Sbjct 165527259 TACATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTTCATA 165527200 Query 2007 GA-TCAATTCCAGGTTGGAGCGGATGTTATGGTGTTGGACGATGAAGGTCTTTGG 2060 || || | ||||||||| || |||||| || || || | | ||| |||| ||| Sbjct 165527199 GACTCTA-TCCAGGTTGTAGTTGATGTTGTGATGCTGTAACA-GAAAGTCTCTGG 165527147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8367864145520