Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_016578.1 Length=2725 Score E Sequences producing significant alignments: (Bits) Value seq13 122 1e-24 seq11 111 3e-21 seq16 109 9e-21 >seq13 Length=197258317 Score = 122 bits (134), Expect = 1e-24 Identities = 266/396 (67%), Gaps = 12/396 (3%) Strand=Plus/Plus Query 1652 CCTGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACGGGTTTCCCGTAT 1711 ||||| ||||| || | ||||| ||| || || ||||| | || || || ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1712 TTGCAGTTACTTTGCCAGTCTCGTTGGGCCCCAACGAGTTCTTTCCAGTGCTTTAGCTTT 1771 ||||||||| ||||| | | |||| || |||| | |||||||||| |||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCTTG 89851314 Query 1772 AGGTAGTGCGGGGCAACGTCATCGATGACGTTGTATGCGACCTCGTTTGAGTAGAC--CC 1829 | ||| || || | | ||||||||||| |||||| | || ||||||||| |||| Sbjct 89851315 AAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1830 TCGAGTTGAAGTCGAGGTGTCCACTGAGATAATTGTGGGGACCTAAAGCACGCGCCCACA 1889 || |||| ||| | || |||| | || || || || |||| | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1890 TCGTCTTCCCCGTCCTCGAATCTCCCTCGACGATCA--GACTTATCGGTCTGTTTGGCCG 1947 | || || || ||||| ||||| | || | ||| | |||| | ||||| | ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1948 CGCTTCGGCGGATAAGGCGAAATACTCATCGGCCCACGACTGCATTTCGTCCGGAACGTT 2007 ||| |||| || | || || ||| ||||| | |||| || || || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 2008 AGTGAATGAGGACAACGGGAACGGAGGGACCCATGG 2043 |||||| || || ||||| ||| ||| |||| Sbjct 89851553 AGTGAAGCTTGATAATGGGAATGGACTTACCTATGG 89851588 >seq11 Length=168460249 Score = 111 bits (122), Expect = 3e-21 Identities = 262/394 (66%), Gaps = 10/394 (3%) Strand=Plus/Minus Query 1652 CCTGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACGGGTTTCCCGTAT 1711 ||||| ||||| |||| ||||| ||| || || ||||| | || || || |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1712 TTGCAGTTACTTTGCCAGTCTCGTTGGGCCCCAACGAGTTCTTTCCAGTGCTTTAGCTTT 1771 ||||||| | ||||| | |||||| || |||| | |||||||||| || | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT------GCATG 165527490 Query 1772 AGGTAGTGCGGGGCAACGTCATCGATGACGTTGTATGCGACCTCGTTTGAGTAGACCCTC 1831 | ||| || || | | ||||||||||| |||||| | | | ||||||| |||| | Sbjct 165527489 AAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTT 165527430 Query 1832 GAGTTGAAGTCGAGGTGTCCACTGAGATAATTGTGGGGACCTAAAGCACGCGCCCACATC 1891 |||| ||| | || |||| | || || || || |||| | |||||||| Sbjct 165527429 TTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATT 165527370 Query 1892 GTCTTCCCCGTCCTCGAATCTCCCTCGACGAT--CAGACTTATCGGTCTGTTTGGCCGCG 1949 || || | ||||| |||| || | | ||| |||| | ||||| | ||||||| Sbjct 165527369 GTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCG 165527312 Query 1950 CTTCGGCGGATAAGGCGAAATACTCATCGGCCCACGACTGCATTTCGTCCGGAACGTTAG 2009 | |||| || | || || ||| ||||| |||| || || || || |||| Sbjct 165527311 CAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTACATTAG 165527252 Query 2010 TGAATGAGGACAACGGGAACGGAGGGACCCATGG 2043 |||| || |||||||| ||| |||||||| Sbjct 165527251 TGAAGCTTGATAACGGGAATGGACTTACCCATGG 165527218 >seq16 Length=188620566 Score = 109 bits (120), Expect = 9e-21 Identities = 245/365 (67%), Gaps = 20/365 (5%) Strand=Plus/Minus Query 1686 CTTTAATTTGAACGGGTTTCCCGTATTTGCAGTTACTTTGCCAGTCTCGTTGGGCCCCAA 1745 |||| || ||||| ||||| | ||| ||||| || ||||||||||| ||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1746 CGAGTTCTTTCCAGTGCTTTAGCTTTAGGTAGTGCGGGGCAACGTCATCGATGACGTTGT 1805 | ||| ||||||| | |||| | || ||| ||||| ||| || ||||| | Sbjct 2249273 GTAATTCCTTCCAGT------GTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1806 ATGCGACCTCGTTTGAGTAGACCCTCGAGTTGAAGTCGAGGTGTCCACTGAGATAATTGT 1865 || | || ||||| ||| | ||| | | || ||||| | | ||||| | |||||| | Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1866 GGGGACCTAAAGCACGCGCCCACATCGTCTTCCCCGTCCTCGAATCTCCCTCGACGATCA 1925 | || || | | |||||||| ||||| || || || ||||| || || | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1926 --GACTTATCGGTCTGTTTGGCC-----GCGCTTCGGCGGATAAGGCGAAATACTCATCG 1978 |||| | ||||| ||| | ||||| | ||||| | ||||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCT--GTCGGAT---GAAAAATAATCATCT 2249047 Query 1979 GCCCACGACTGCATTTCGTCCGGAACGTTAGTGAATGAGGACAACGGGAACGGAGGGACC 2038 ||||| ||||| | | || ||||| ||||| || |||| | | | ||| ||| Sbjct 2249046 GCCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACGGCGTATGGACTTACC 2248987 Query 2039 CATGG 2043 ||||| Sbjct 2248986 CATGG 2248982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8611060197168