Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_016580.1 Length=2540 Score E Sequences producing significant alignments: (Bits) Value seq16 120 5e-24 seq11 118 2e-23 seq13 111 3e-21 >seq16 Length=188620566 Score = 120 bits (132), Expect = 5e-24 Identities = 229/336 (68%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1524 CTTTAATTTGAACAGGCTTTCCGTATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAA 1583 |||| || ||||| || |||| ||| || || || | |||||||| ||||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1584 TCAACTCTTTCCAATGTTTCATCTTTAGATAATGCGGACTGACATCATCAATGACGTTAT 1643 || || ||||| ||||| || | | || || | || | |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTT------TAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1644 ATTGAACAGTATTTGAATATACTTTAGAATTAAAATCAAGATGTCCGCTCAAATAATTAT 1703 ||| ||| || || | || ||| ||| || || | || || || |||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1704 GTGGGCCTAGTGCACGAGCCCACATCGTCTTCCCTGTTCGACTATCTCCTTCAATGATAA 1763 || || | || | |||||||| ||||| || |||| ||| |||||||| || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1764 T--ACTAATAGGTCTTTCTGGCCGCGCAGCGGAATCCATACCAAAATAAGCATCAGCCCA 1821 | ||| |||||| ||| || | |||| || ||||||| |||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1822 TTCTTGCATCTCGTCAGGGACATTAGTGAATGAGGA 1857 || |||||| | | || || || ||||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq11 Length=168460249 Score = 118 bits (130), Expect = 2e-23 Identities = 249/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1484 CCCTCTCCTGGATTGCACAGCACGATTGATGGGATCCCTCCTTTAATTTGAACAGGCTTT 1543 ||| ||||||| ||||| |||| ||||| ||| || |||||||| | || ||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1544 CCGTATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATCAACTCTTTCCAATGTTTC 1603 |||||||| |||| |||||||| | | ||| || ||||| ||||||||||| || Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG---- 165527494 Query 1604 ATCTTTAGATAATGCGGACTGACATCATCAATGACGTTATATTGAACAGTATTTGAATAT 1663 | | | || || || | ||||| |||| ||| || | | | | ||||| | Sbjct 165527493 --CATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1664 ACTTTAGAATTAAAATCAAGATGTCCGCTCAAATAATTATGTGGGCCTAGTGCACGAGCC 1723 ||||| || || | ||| || | | || |||||| || | | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1724 CACATCGTCTTCCCTGTTCGACTATCTCCTTCAATGATAAT--ACTAATAGGTCTTTCTG 1781 ||||| || || | ||| | || |||| ||||| | ||| | ||||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1782 GCCGCGCAGCGGAATCCATACCAAAATAAGCATCAGCCCATTCTTGCATCTCGTCAGGGA 1841 |||||||||||| | | |||||| || | ||| ||||||||||||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1842 CATTAGTGAA 1851 |||||||||| Sbjct 165527257 CATTAGTGAA 165527248 >seq13 Length=197258317 Score = 111 bits (122), Expect = 3e-21 Identities = 247/368 (67%), Gaps = 12/368 (3%) Strand=Plus/Plus Query 1488 CTCCTGGATTGCACAGCACGATTGATGGGATCCCTCCTTTAATTTGAACAGGCTTTCCGT 1547 ||||||| ||||| || | ||||| ||| || |||||||| | || ||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1548 ATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATCAACTCTTTCCAATGTTTCATCT 1607 |||| ||||| |||||||| | ||| || ||||| ||||||||||| || || Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTG------CT 89851312 Query 1608 TTAGATAATGCGGACTGACATCATCAATGACGTTATATTGAACAGTATTTGAATATAC-- 1665 | | || || || | ||||| |||| ||| || | ||| ||||| | || Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1666 TTTAGAATTAAAATCAAGATGTCCGCTCAAATAATTATGTGGGCCTAGTGCACGAGCCCA 1725 ||| || | || | ||| || | | || |||||| || | | | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1726 CATCGTCTTCCCTGTTCGACTATCTCCTTCAATGATAAT--ACTAATAGGTCTTTCTGGC 1783 ||| || || ||||| | ||| | ||| ||||| || ||| | ||||| ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1784 CGCGCAGCGGAATCCATACCAAAATAAGCATCAGCCCATTCTTGCATCTCGTCAGGGACA 1843 |||||||||| | | ||||| || | ||| ||||||| ||||| || || || ||| Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1844 TTAGTGAA 1851 |||||||| Sbjct 89851551 TTAGTGAA 89851558 Score = 82.4 bits (90), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 1721 GCCCACATCGTCTTCCCTGTTCGACTATCTCCTTCAATGATAATACTAA--TAGGTCTTT 1778 |||||||| || || ||||||| || ||||| ||||| |||| | | ||||| Sbjct 172133998 GCCCACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCA 172134055 Query 1779 CTGGCCGCGCAGCGGAATCCATACCAAAATAAGCATCAGCCCATTCTTGCATCTCGTCAG 1838 | ||||| ||||||| | |||||||| || | ||| ||||||||||||| || || Sbjct 172134056 CCGGCCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTA 172134115 Query 1839 GGACATTAGTGAA 1851 | ||||||||||| Sbjct 172134116 GTACATTAGTGAA 172134128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8019069808288