Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_016649.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq13 114 2e-22 seq16 109 1e-20 seq11 109 1e-20 >seq13 Length=197258317 Score = 114 bits (126), Expect = 2e-22 Identities = 210/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1685 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1744 || || ||||| || | |||||||||||| || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1745 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAG 1804 || ||| || ||||| | ||| || || || |||||||| |||| |||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1805 TGCGGATCAACGTCATCAATGACGTTATACCAAGCGTCATTACTGTACAC-CTTTGGGCT 1863 || || | |||||| |||| ||| || | |||| || | | || ||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1864 T-AGATCTAAATGCCCACATAAATAGTTATGTGGGCCTAAAGACCTAGCCCACATTGTTT 1922 | || || | ||| ||||||| ||||||||| || ||||| || ||||||||||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1923 TCCCAGTACGACTGTCGCCCTCAATTACTAT--ACTTTGAGGTCTCAGGGGCCGCGCAGC 1980 | || || | || | || || | ||| ||||| ||||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 1981 GGC 1983 ||| Sbjct 89851499 GGC 89851501 >seq16 Length=188620566 Score = 109 bits (120), Expect = 1e-20 Identities = 188/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 1719 CTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCA 1778 |||| || ||||| || || | |||||| || | ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1779 TGAACTCTTTAAAGTGTTTGAGGAAGTGCGGATCAACGTCATCAATGACGTTATA--CCA 1836 || || || ||||||| | | || || | ||||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1837 AGCGTCATTACTGTACACCTTTGGGCTTAGATCTAAATGCCCACATAAATAGTTATGTGG 1896 | || ||| | | ||| | || | | ||||||| |||| |||||| |||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1897 GCCTAAAGACCTAGCCCACATTGTTTTCCCAGTACGACTGTCGCCCTCAATTACTATACT 1956 || || || || ||||||||||| || || || | || || ||||||| ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1957 TTGAGGTCTCAGGGGCCGCGCAGCGGCGTCG 1987 |||||||||| || || | |||| |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCGCTGTCG 2249065 >seq11 Length=168460249 Score = 109 bits (120), Expect = 1e-20 Identities = 236/349 (68%), Gaps = 7/349 (2%) Strand=Plus/Minus Query 1685 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1744 || || ||||| || | |||||||||||| || ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1745 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAG 1804 || || || ||||| | | ||| || || || |||||||| |||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1805 TGCGGATCAACGTCATCAATGACGTTATACCAAGCGTCATTACTGTACACCTTTGGGCTT 1864 || || | |||||| |||| ||| || ||||| || | | || ||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1865 AGATCTAAATGCCCACATAAATAGTTATGTGGGCCTAAAGACCTAGCCCACATTGTTTTC 1924 | || | ||| ||||||| ||||||||| || ||||| || |||||||||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1925 CCAGTACGACTGTCGCCCTCAATTACTAT--ACTTTGAGGTCTCAGGGGCCGCGCAGCGG 1982 | || | | || | || | | | ||||| ||||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1983 C--GTCGA-CAACATTTACACACGCCCACTCTTCAAGTTCTTCTGGAAC 2028 | || || ||| | | | ||||| |||| || |||||||| || Sbjct 165527305 CTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTAC 165527257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8691058898368