Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_016660.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq13 123 4e-25 seq16 116 6e-23 seq11 114 2e-22 >seq13 Length=197258317 Score = 123 bits (136), Expect = 4e-25 Identities = 212/303 (70%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1686 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1745 || || ||||| || | |||||||||||| || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1746 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTGAGGAAG 1805 || ||| || ||||| | ||| || || || || ||||| ||||||||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1806 TGCGGATCTACGTCATCAATGACGTTATACCAAGCGTCGTTACTGTACAC-CTTTGGGCT 1864 || || || |||||| |||| ||| || | ||||||| | | || ||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1865 T-AGATCTAAATGCCCACATAAATAGTTATGTGGGCCTAAAGACCTAGCCCACATTGTCT 1923 | || || | ||| ||||||| ||||||||| || ||||| || ||||||||||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1924 TCCCAGTACGACTGTCACCCTCAATCACTAT--ACTTTGAGGTCTCAAGGGCCGCGCAGC 1981 | || || | |||| || || | ||| ||||| ||||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 1982 GGC 1984 ||| Sbjct 89851499 GGC 89851501 >seq16 Length=188620566 Score = 116 bits (128), Expect = 6e-23 Identities = 186/265 (70%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1720 CTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCA 1779 |||| || ||||| || || | |||||| || | ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1780 TGAATTCTTTAAAGTGCTTGAGGAAGTGCGGATCTACGTCATCAATGACGTTATA--CCA 1837 ||||| || |||| || | | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1838 AGCGTCGTTACTGTACACCTTTGGGCTTAGATCTAAATGCCCACATAAATAGTTATGTGG 1897 | |||||| | | ||| | || | | ||||||| |||| |||||| |||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1898 GCCTAAAGACCTAGCCCACATTGTCTTCCCAGTACGACTGTCACCCTCAATCACTATACT 1957 || || || || |||||||||||||| || || | ||||| ||||| | ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1958 TTGAGGTCTCAAGGGCCGCGCAGCG 1982 ||||||||||| || || | |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 114 bits (126), Expect = 2e-22 Identities = 207/301 (69%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1686 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1745 || || ||||| || | |||||||||||| || ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1746 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTGAGGAAG 1805 || || || ||||| | | ||| || || || || ||||| ||||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1806 TGCGGATCTACGTCATCAATGACGTTATACCAAGCGTCGTTACTGTACACCTTTGGGCTT 1865 || || || |||||| |||| ||| || ||||| ||| | | || ||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1866 AGATCTAAATGCCCACATAAATAGTTATGTGGGCCTAAAGACCTAGCCCACATTGTCTTC 1925 | || | ||| ||||||| ||||||||| || ||||| || ||||||||||| || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1926 CCAGTACGACTGTCACCCTCAATCACTAT--ACTTTGAGGTCTCAAGGGCCGCGCAGCGG 1983 | || | | ||| | || | | | ||||| ||||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1984 C 1984 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8659059417888