Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_016965.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq16 141 2e-30 seq13 125 1e-25 seq11 116 6e-23 >seq16 Length=188620566 Score = 141 bits (156), Expect = 2e-30 Identities = 194/267 (73%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1727 CTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCA 1786 |||| || ||||| || |||| ||| || |||| ||||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1787 TGAATTCTTTAAAGTGCTTTAGATAGTGCGGATCTACGTCATCAATGACGTTGTA--CCA 1844 ||||| || |||| |||| | | || || | |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1845 AGCATCATTATTGTAGACCTTAGGGCTAAGGTCTAGGTGACCACACAGATAATTATGTGG 1904 |||| ||| | | ||| |||| | | ||||| | ||||| | |||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1905 TCCCAACGATCTAGCCCACATGGTCTTACCCGTTCTACTATCACCTTCTATCACTAT--A 1962 |||||| ||||| |||||||| ||||| || ||||| ||||||||| || | ||| | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1963 CTTATGGGTCTTAACGGCCGCGCAGCG 1989 || | ||||| || || || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 125 bits (138), Expect = 1e-25 Identities = 212/304 (70%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1692 TCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1751 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1752 TTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1811 ||| || || ||||| | | ||| || || || || ||||| ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1812 GTGCGGATCTACGTCATCAATGACGTTGTACCAAGCATCATTATTGTAGACCTTAGGGC- 1870 || || || |||||| |||| |||||| | | || || | |||| || Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1871 -TAAGGTCTAGGTGACCACACAGATAATTATGTGGTCCCAACGATCTAGCCCACATGGTC 1929 | ||||| | |||||||| | || |||||| |||||| ||||| |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1930 TTACCCGTTCTACTATCACCTTCTATCACTAT--ACTTATGGGTCTTAACGGCCGCGCAG 1987 ||||| || || ||||| |||||| | ||| |||| ||||| | ||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAG 89851497 Query 1988 CGGC 1991 |||| Sbjct 89851498 CGGC 89851501 >seq11 Length=168460249 Score = 116 bits (128), Expect = 6e-23 Identities = 208/302 (69%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1692 TCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1751 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1752 TTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1811 ||| | || ||||| | || ||| || || || || ||||| ||||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1812 GTGCGGATCTACGTCATCAATGACGTTGTACCAAGCATCATTATTGTAGACCTTAGGGCT 1871 || || || |||||| |||| |||||| ||| | || | |||| || | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1872 AAGGTCTAGGTGACCACACAGATAATTATGTGGTCCCAACGATCTAGCCCACATGGTCTT 1931 |||| | |||||||| | || |||||| |||||| ||||| |||||||| || || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1932 ACCCGTTCTACTATCACCTTCTATCACTAT--ACTTATGGGTCTTAACGGCCGCGCAGCG 1989 | || || || ||||| ||| | | | |||| ||||| | ||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCG 165527307 Query 1990 GC 1991 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8729458274944