Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_016984.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value seq16 111 3e-21 seq13 82.4 1e-12 seq11 77.0 6e-11 >seq16 Length=188620566 Score = 111 bits (122), Expect = 3e-21 Identities = 187/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1727 CTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCA 1786 |||| || ||||| || |||| ||| || || | ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1787 TGAATTCCTTAAAGTGCTTTAGATAATGCGGATCAACGTCATTAATGACGTTATA--CCA 1844 |||||||| |||| |||| | | || || | ||||| || ||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1845 GGCGTCGTTATTGTAGACCTTTGGGCTAAGGTCGAGATGTCCACACAAATAGTTGTGTGG 1904 | |||||| | | ||| | || | | ||| | || |||| ||||| || ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1905 TCCCAGGGACCTGGCCCACATTGTCTTCCCCGTTCTACTCTCACCCTCCAACACTAT--A 1962 ||||| || || |||||||||||||| || ||||| ||||| || | | ||| | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1963 CTCATGGGTCTTAAAGGCCGCGCAGCG 1989 || | ||||| || || || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 82.4 bits (90), Expect = 1e-12 Identities = 200/302 (66%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 1692 TCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1751 |||||| ||||| || | ||| | || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1752 TTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATA 1811 ||| ||| || ||||| | ||| || || || || || || ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1812 ATGCGGATCAACGTCATTAATGACGTTATACCAGGCGTCGTTATTGTAGACCTTTGGGC- 1870 || || | ||||| |||| ||| || ||||||| | |||| ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1871 -TAAGGTCGAGATGTCCACACAAATAGTTGTGTGGTCCCAGGGACCTGGCCCACATTGTC 1929 | ||||| | ||| ||||| | ||||| ||| ||||| || || ||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1930 TTCCCCGTTCTACTCTCACCCTCCAACACTATACTCATGGGTCTTAAAGGCCGCGCAGCG 1989 || || || || |||| || | | ||| | | ||||| | |||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCG 89851499 Query 1990 GC 1991 || Sbjct 89851500 GC 89851501 >seq11 Length=168460249 Score = 77.0 bits (84), Expect = 6e-11 Identities = 161/240 (67%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 1692 TCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1751 |||||| ||||| || | ||| | || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1752 TTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATA 1811 ||| || || ||||| | | ||| || || || || || || ||||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1812 ATGCGGATCAACGTCATTAATGACGTTATACCAGGCGTCGTTATTGTAGACCTTTGGGCT 1871 || || | ||||| |||| ||| || |||| ||| | |||| ||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1872 AAGGTCGAGATGTCCACACAAATAGTTGTGTGGTCCCAGGGACCTGGCCCACATTGTCTT 1931 |||| | ||| ||||| | ||||| ||| ||||| || || ||||||||||| || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8681459054224