Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_016998.1 Length=2675 Score E Sequences producing significant alignments: (Bits) Value seq16 165 1e-37 seq13 140 5e-30 seq11 129 1e-26 >seq16 Length=188620566 Score = 165 bits (182), Expect = 1e-37 Identities = 239/336 (71%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1647 CTTTAATTTGAACTGGCTTCCCGTATTTGCAGTTGCTTTGCCAGTCTTTCTGGGCCCCAA 1706 |||| || ||||| || || | ||| ||||| || |||||||||| | || || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1707 TGAGCTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGAGTGACATCATCAATGACGTTAT 1766 | || |||||||| |||| | |||| || | || | |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1767 ATTCCGCTTCATTTGAATAAACCCTAGAATTGAAATCCAGATGTCCACTCAAATAATTAT 1826 ||||| | || || || ||||| ||| ||| || || | || ||||| |||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1827 GTGGGCCCAATGCACGAGCCCACATCGTCTTCCCCGTTCGACTATCACCCTCGACGATGA 1886 || ||||||| | |||||||| ||||| || |||| |||||| || | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1887 T--ACTAATAGGTCTCTCCGGCCGCGCAGCGGCACCTCTTCCAAAATAATCATCAGCCCA 1944 | ||| ||||||| || || | |||| | | |||||||||||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1945 TTCTTGCATATCTTGTGGGACGTTAGTGAATGAGGA 1980 || ||||||| ||||||| ||||| ||||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 140 bits (154), Expect = 5e-30 Identities = 273/399 (68%), Gaps = 12/399 (3%) Strand=Plus/Plus Query 1611 CTCCTGGATTACATAGCACAATTGATGGGATACCTCCTTTAATTTGAACTGGCTTCCCGT 1670 ||||||| || ||||| | |||| ||| || |||||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1671 ATTTGCAGTTGCTTTGCCAGTCTTTCTGGGCCCCAATGAGCTCTTTCCAGTGCTTTAGCT 1730 |||||||||| ||||| | || || || ||||| | ||||||||||||||| | Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA--- 89851315 Query 1731 TTAGATATTGCGGAGTGACATCATCAATGACGTTATATTCCGCTTCATTTGAATAAAC-- 1788 || ||||| || | | ||||| |||| ||| || || | || ||||| | || Sbjct 89851316 --AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1789 CCTAGAATTGAAATCCAGATGTCCACTCAAATAATTATGTGGGCCCAATGCACGAGCCCA 1848 | |||| |||| ||| |||| | || |||||| ||||| | | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1849 CATCGTCTTCCCCGTTCGACTATCACCCTCGACGATGAT--ACTAATAGGTCTCTCCGGC 1906 ||| || || || || | ||||| || | ||| || ||| | |||||| |||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1907 CGCGCAGCGGCACCTCTTCCAAAATAATCATCAGCCCATTCTTGCATATCTTGTGGGACG 1966 ||||||||||| | |||||| || ||| ||||||| ||||| |||| ||| || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1967 TTAGTGAATGAGGAGAGTGGAAACGGAGGAACCCATGGA 2005 |||||||| || | ||| || ||| ||| ||||| Sbjct 89851551 TTAGTGAAGCTTGATAATGGGAATGGACTTACCTATGGA 89851589 Score = 77.0 bits (84), Expect = 5e-11 Identities = 187/280 (67%), Gaps = 5/280 (2%) Strand=Plus/Plus Query 1728 GCTTTAGATATTGCGGAGTGACATCATCAATGACGTTATATTCCGCTTCATTTGAATAAA 1787 |||| | ||||| || | | ||||| |||| ||| || || || | ||||| | | Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1788 CCCTAGAATTGAAATCCAGATGTCCACTCAAATAATTATGTGGGCCCAATGCACGAGCCC 1847 | | |||| |||| || |||| | || |||||| |||| | | |||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1848 ACATCGTCTTCCCCGTTCGACTATCACCCTCGACGATGATACTAA--TAGGTCTCTCCGG 1905 |||| || || || |||| || ||| || | ||| |||| | | |||||| |||| Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGG 172134059 Query 1906 CCGCGCAGCGGCACCTCTTCCAAAATAATCATCAGCCCATTCTTGCATATCTTGTGGGAC 1965 ||| |||||||| | | ||||| || ||| ||||||||||||| |||| | | || Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 1966 GTTAGTGAATGAGGAGAGTGGAAACGGAGGAACCCATGGA 2005 |||||||| || | || || ||| ||||||||| Sbjct 172134120 ATTAGTGAAGCTTGATAACGGGAATGGACATACCCATGGA 172134159 >seq11 Length=168460249 Score = 129 bits (142), Expect = 1e-26 Identities = 271/401 (68%), Gaps = 10/401 (2%) Strand=Plus/Minus Query 1607 CCCTCTCCTGGATTACATAGCACAATTGATGGGATACCTCCTTTAATTTGAACTGGCTTC 1666 ||| ||||||| || ||||||| |||| ||| || |||||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1667 CCGTATTTGCAGTTGCTTTGCCAGTCTTTCTGGGCCCCAATGAGCTCTTTCCAGTGCTTT 1726 ||||||||||||| ||||| | | || || ||||| | ||||||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1727 AGCTTTAGATATTGCGGAGTGACATCATCAATGACGTTATATTCCGCTTCATTTGAATAA 1786 | || ||||| || | | ||||| |||| ||| || || || | ||||| | Sbjct 165527489 A-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1787 ACCCTAGAATTGAAATCCAGATGTCCACTCAAATAATTATGTGGGCCCAATGCACGAGCC 1846 || | ||| |||| ||| |||| | || |||||| ||||| | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1847 CACATCGTCTTCCCCGTTCGACTATCACCCTCGACGATGAT--ACTAATAGGTCTCTCCG 1904 ||||| || || | || | || ||| | | ||| | ||| | |||||| || Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1905 GCCGCGCAGCGGCACCTCTTCCAAAATAATCATCAGCCCATTCTTGCATATCTTGTGGGA 1964 ||||||||||||| | ||||| || ||| ||||||||||||| |||| ||| | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1965 CGTTAGTGAATGAGGAGAGTGGAAACGGAGGAACCCATGGA 2005 | |||||||| || | || || ||| ||||||||| Sbjct 165527257 CATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGA 165527217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8451062794768