Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_016999.1 Length=2660 Score E Sequences producing significant alignments: (Bits) Value seq13 158 2e-35 seq16 143 4e-31 seq11 140 5e-30 >seq13 Length=197258317 Score = 158 bits (174), Expect = 2e-35 Identities = 256/366 (70%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1562 CCAGGATTGCAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTAT 1621 || || ||||| || | || ||| || || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1622 TTGCAATTTGATTGCCAGTCCTTTTGAGCACCTATCAATTCTTTCCAGTGCTTTAACTTT 1681 ||||| || || ||||| | | |||||| || || || |||||||||||||| || | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT-- 89851318 Query 1682 AGATATTGCGGTGCGATGTCATCTATCACGTTGTACTGCACATCATTTGAATAGACCTTT 1741 |||| |||| |||||||| || | |||||| | || || ||||| |||| ||| Sbjct 89851319 ----ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1742 GAAT--TGAAATCGAGGTGACCACTCAAGTAATTATGGGACCCCAATGCACGTGCCCACA 1799 | ||| || | ||||||| | ||| ||||| ||||| | | |||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1800 TGGTCTTGCCCGTTCGAGAGTCACCCTCGATGATTAT--ACTAATTGGTCTCTCCGGCCG 1857 | || || || || | || |||| || |||||||| ||| |||||||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1858 CGCAGCGGCACTTCTTCCGAAATAGTCATCTGCCCAAGCTTTCATCTCTTCTGGGACATT 1917 ||||||||| | ||| || || ||||||||| || || |||||||| ||||| Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1918 AATGAA 1923 | |||| Sbjct 89851553 AGTGAA 89851558 >seq16 Length=188620566 Score = 143 bits (158), Expect = 4e-31 Identities = 238/339 (70%), Gaps = 16/339 (5%) Strand=Plus/Minus Query 1596 CTTTAATTTGAACTGGCTTCCCGTATTTGCAATTTGATTGCCAGTCCTTTTGAGCACCTA 1655 |||| || ||||| || || | ||| ||||| |||| ||||||||| |||| ||||| | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1656 TCAATTCTTTCCAGTGCTTTAACTTTAGATATTGCGGTGCGATGTCATCTATCACGTTGT 1715 ||||| |||||||| ||||| | |||| || | || ||| || ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1716 ACTGCACATCATTTGAATAGACCTTTGAATTGAAATCGAGGTGACCACTCAAGTAATTAT 1775 | | |||||| || || | ||| | | ||| || || | | |||||| || ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1776 GGGACCCCAATGCACGTGCCCACATGGTCTTGCCCGTTCGAGAGTCACCCTCGATGATTA 1835 | ||||||| | ||||||||| ||||| || |||| || ||||| || || |||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1836 T--ACTAATTGGTCTCTCCGGCCGCGCAGCGGCACT-TCTTCCGAAA--TAGTCATCTGC 1890 | ||| | |||||| || || | |||| || || |||| || |||||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCG---CTGTCGGATGAAAAATAATCATCTGC 2249045 Query 1891 CCAAGCTTTCATCTCTTCTGGGACATTAATGAAAGAAGA 1929 ||| || ||| ||| ||| || || |||||||||| Sbjct 2249044 CCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq11 Length=168460249 Score = 140 bits (154), Expect = 5e-30 Identities = 254/370 (69%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1556 CCCTCGCCAGGATTGCAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTC 1615 ||| | || || ||||| |||| || ||| || || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1616 CCGTATTTGCAATTTGATTGCCAGTCCTTTTGAGCACCTATCAATTCTTTCCAGTGCTTT 1675 ||||||||||| | || ||||| | |||||| || || || |||||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1676 AACTTTAGATATTGCGGTGCGATGTCATCTATCACGTTGTACTGCACATCATTTGAATAG 1735 || | |||| |||| |||||||| || | |||||| | | | ||||| || Sbjct 165527489 AAGT------ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1736 ACCTTTGAATTGAAATCGAGGTGACCACTCAAGTAATTATGGGACCCCAATGCACGTGCC 1795 || ||| ||| || | ||||||| | ||| ||||| ||||| | | |||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1796 CACATGGTCTTGCCCGTTCGAGAGTCACCCTCGATGATTAT--ACTAATTGGTCTCTCCG 1853 ||||| || |||| || | || | ||| | |||||| | ||| |||||||| || Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1854 GCCGCGCAGCGGCACTTCTTCCGAAATAGTCATCTGCCCAAGCTTTCATCTCTTCTGGGA 1913 ||||||||||||| | || || || ||||||||| ||| || |||||||| | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1914 CATTAATGAA 1923 ||||| |||| Sbjct 165527257 CATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8403063574048