Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_017000.1 Length=2656 Score E Sequences producing significant alignments: (Bits) Value seq13 122 1e-24 seq11 107 3e-20 seq16 102 1e-18 >seq13 Length=197258317 Score = 122 bits (134), Expect = 1e-24 Identities = 249/366 (68%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1596 CCAGGATTGCAAAGCACGATTGATGGGATACCACCTTTAATTTGAACAGGCTTGCCGTAT 1655 || || ||||| || | ||||| ||| || || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1656 TTGCAATTTGATTGCCAGTCCTTTTGAGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTT 1715 ||||| || || ||||| | | |||||| ||||| || |||||||||||||| | | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1716 AGATAGGTGGGCGCGATGTCGTCTATGATGTTGTACTGCACATGGTTTGAATAGAC--CC 1773 | ||||| ||||| || ||||||||||| | || | |||||| |||| Sbjct 89851321 TG--TGGTGG----TATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1774 GCGAGTTGAAATCGAGGTGTCCACTCAGATAATTGTGGACCCCCAATGCACGCGCCCACA 1833 | |||| || | || |||| | || || || ||||| | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1834 TCGTCTTCCCCGTTCGTGAATCACCTTCGACGATGAT--ACTAATAGGTCTCTCCGGCCG 1891 | || || || || | ||||||| ||| | ||| || ||| | |||||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1892 CGCAGCGGCACCTCTCCCGAAATAATTATCAGCCCAATCTTGCATCTCCTTGGGCACGTT 1951 ||||||||| | || || || ||| ||||| | ||||| || | || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1952 AGTGAA 1957 |||||| Sbjct 89851553 AGTGAA 89851558 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 244/364 (67%), Gaps = 10/364 (3%) Strand=Plus/Minus Query 1596 CCAGGATTGCAAAGCACGATTGATGGGATACCACCTTTAATTTGAACAGGCTTGCCGTAT 1655 || || ||||| |||| ||||| ||| || || ||||| | || |||||||||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1656 TTGCAATTTGATTGCCAGTCCTTTTGAGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTT 1715 ||||| | || ||||| | |||||| ||||| || |||||||||||| | | | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1716 AGATAGGTGGGCGCGATGTCGTCTATGATGTTGTACTGCACATGGTTTGAATAGACCCGC 1775 | ||||| ||||| || ||||||||||| | | | |||||| |||| Sbjct 165527483 TG--TGGTGG----TATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTT 165527430 Query 1776 GAGTTGAAATCGAGGTGTCCACTCAGATAATTGTGGACCCCCAATGCACGCGCCCACATC 1835 |||| || | || |||| | || || || ||||| | | |||||||| Sbjct 165527429 TTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATT 165527370 Query 1836 GTCTTCCCCGTTCGTGAATCACCTTCGACGATGAT--ACTAATAGGTCTCTCCGGCCGCG 1893 || || | || | |||| ||||| | ||| | ||| | |||||| |||||||| Sbjct 165527369 GTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCG 165527312 Query 1894 CAGCGGCACCTCTCCCGAAATAATTATCAGCCCAATCTTGCATCTCCTTGGGCACGTTAG 1953 ||||||| | || || || ||| ||||| ||||||| || | || || |||| Sbjct 165527311 CAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTACATTAG 165527252 Query 1954 TGAA 1957 |||| Sbjct 165527251 TGAA 165527248 Score = 93.3 bits (102), Expect = 7e-16 Identities = 161/228 (71%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 1174 GTCCAGACTTGGAAGTTCAGGAATGCCTTGTGAAGATCCAGTTTGTTCCTGAGGTTGTGG 1233 |||| | || |||||||||| ||||||||||||||||||| | || || ||||||| | Sbjct 165517307 GTCCGTATTTTGAAGTTCAGGTATGCCTTGTGAAGATCCAGGTGCTTTCTTAGGTTGTTG 165517248 Query 1234 TTGAACCTTATCTGGA-CGTGGTATATTC--TTGTCCTTGTGTGTGGGGGAT-CCTCTAC 1289 ||||||| |||||| | | | | || || || | | | || | | | | | Sbjct 165517247 TTGAACCGTATCTGCAGCTCGATGTAGTCCGTTTCCATCATACACGGACGTTGCAGGTGC 165517188 Query 1290 GT-TGTACGTCTTGAAATAGAGGGGATTTGATATCTCCCAGATATACACGCCATTCTCTG 1348 | | ||| |||||| ||||| ||||| |||||||| | | || || ||||| | | Sbjct 165517187 TTCTTTAC--CTTGAAGTAGAGAGGATTGGATATCTCGGATAAGTAAACTCCATTTTGGG 165517130 Query 1349 CCTGACGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGACCTGCG 1396 | ||| ||||||| || | | ||||||||| |||||||| ||| || Sbjct 165517129 CTTGATGTGCAGTAATTAACTTGCCTGTGCGTAAATCCATGGCCTTCG 165517082 >seq16 Length=188620566 Score = 102 bits (112), Expect = 1e-18 Identities = 230/340 (68%), Gaps = 18/340 (5%) Strand=Plus/Minus Query 1630 CTTTAATTTGAACAGGCTTGCCGTATTTGCAATTTGATTGCCAGTCCTTTTGAGCCCCAA 1689 |||| || ||||| || || | ||| ||||| |||| ||||||||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1690 TCAATTCTTTCCAGTGCTTTAGCTTTAGATAGGTGGGCGCGATGTCGTCTATGATGTTGT 1749 ||||| |||||||| |||| | || | |||| | || || || | ||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTG-TGGGTTA-ACGTTATCAATAACGTTAT 2249220 Query 1750 ACTGCACATGGTTTGAATAGACCCGCGAGTTGAAATCGAGGTGTCCACTCAGATAATTGT 1809 | | ||||| ||| || | ||| | || || || | | ||||| | |||||| | Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1810 GGACCCCCAATGCACGCGCCCACATCGTCTTCCCCGTTCGTGAATCACCTTCGACGATGA 1869 | ||||||| | |||||||| ||||| || |||| |||||||||||| | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1870 T--ACTAATAGGTCTCTCCGGCCGCGCAGCGGCACCTCTC----CCGAAATAATTATCAG 1923 | ||| ||||||| || || | |||| || || ||||||| ||| | Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTG 2249046 Query 1924 CCCAATCTTGCATCTCCTTGGGCACGTTAGTGAATGAGGA 1963 |||| | |||||| | | || ||||| ||||| || || Sbjct 2249045 CCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8390263781856