Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_017001.1 Length=2620 Score E Sequences producing significant alignments: (Bits) Value seq16 168 1e-38 seq13 116 6e-23 seq11 109 9e-21 >seq16 Length=188620566 Score = 168 bits (186), Expect = 1e-38 Identities = 241/336 (72%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1586 CTTTAATTTGAACTGGCTTACCGTATTTGCAGTTTGATTGCCAGTCCCTTTGGGCCCCGA 1645 |||| || ||||| || || | ||| ||||| |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1646 TAAGTTCTTTCCAGTGCTTTAACTTTAGATAGTGCGGTGCGACATCATCAATTACGTTAT 1705 | ||| |||||||| ||||| | || ||| | | || | |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1706 ACTGCACATCGTTTGAGTAGACCCTTGAATTGAAATCGAGGTGACCACTCAAGTAATTGT 1765 | | ||||||||| ||| | ||| | | ||| || || | | |||||| || ||||| | Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1766 GGGACCCTAATGTACGAGCCCACATGGTCTTGCCGGTTCTTGAATCACCCTCGATTATTA 1825 | || |||| | |||||||| ||||| ||||||||||||||||| || ||||||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1826 T--ACTGATAGGCCTCTCCGGCCGCGCAGCGGCATCCCTTCCGAAATAATCATCTGCCCA 1883 | |||| ||| ||| || || | |||| || | ||||||||||||||||| Sbjct 2249099 TTGACTG--AGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1884 AGCTTGCATCTCGACAGGCACGTTAGTGAACGACGA 1919 |||||| | || ||||| ||||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 116 bits (128), Expect = 6e-23 Identities = 247/366 (67%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1552 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTACCGTAT 1611 || || ||||| || | ||| ||| || || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1612 TTGCAGTTTGATTGCCAGTCCCTTTGGGCCCCGATAAGTTCTTTCCAGTGCTTTAACTTT 1671 |||||||| || ||||| | ||| || || |||| |||||||||||||| || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA---- 89851316 Query 1672 AGATAGTGCGGTGCGACATCATCAATTACGTTATACTGCACATCGTTTGAGTAGACCCTT 1731 || || |||| | ||||| || | ||| || | || ||||||||| |||| || Sbjct 89851317 --GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1732 --GAATTGAAATCGAGGTGACCACTCAAGTAATTGTGGGACCCTAATGTACGAGCCCACA 1789 |||| || | ||||||| | ||| || || || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1790 TGGTCTTGCCGGTTCTTGAATCACCCTCGATTATTAT--ACTGATAGGCCTCTCCGGCCG 1847 | || || || || || ||||||| || || ||||| ||| | || ||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1848 CGCAGCGGCATCCCTTCCGAAATAATCATCTGCCCAAGCTTGCATCTCGACAGGCACGTT 1907 ||||||||| | ||| || || ||||||||| ||||| || | || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1908 AGTGAA 1913 |||||| Sbjct 89851553 AGTGAA 89851558 >seq11 Length=168460249 Score = 109 bits (120), Expect = 9e-21 Identities = 247/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1546 CCCTCGCCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTA 1605 ||| | || || ||||| |||| ||| ||| || || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1606 CCGTATTTGCAGTTTGATTGCCAGTCCCTTTGGGCCCCGATAAGTTCTTTCCAGTGCTTT 1665 ||||||||||||| || ||||| | | ||| || || |||| |||||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1666 AACTTTAGATAGTGCGGTGCGACATCATCAATTACGTTATACTGCACATCGTTTGAGTAG 1725 || || || |||| | ||||| || | ||| || | | | ||||||| || Sbjct 165527489 AA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1726 ACCCTTGAATTGAAATCGAGGTGACCACTCAAGTAATTGTGGGACCCTAATGTACGAGCC 1785 || || ||| || | ||||||| | ||| || || || || | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1786 CACATGGTCTTGCCGGTTCTTGAATCACCCTCGATTATTAT--ACTGATAGGCCTCTCCG 1843 ||||| || |||| || || |||| ||| | || ||| | ||| | || ||| || Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1844 GCCGCGCAGCGGCATCCCTTCCGAAATAATCATCTGCCCAAGCTTGCATCTCGACAGGCA 1903 ||||||||||||| | || || || ||||||||| |||||| || | || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1904 CGTTAGTGAA 1913 | |||||||| Sbjct 165527257 CATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8275065652128