Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_017987.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq13 129 1e-26 seq16 125 1e-25 seq11 107 3e-20 >seq13 Length=197258317 Score = 129 bits (142), Expect = 1e-26 Identities = 216/306 (71%), Gaps = 10/306 (3%) Strand=Plus/Plus Query 1687 TCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTA 1746 |||||| ||||| || | |||||||||||| || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1747 CTTTGTGTTTGATTGCCAGTCCCTTTGGGCACCCATGAACTCCTTAAAGTGCTTTAGGTA 1806 || ||| || ||||| | ||| || || || ||||| || ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1807 ATGCGGGTCTACGTCATCAATGACGTTATA--CCACGCCTCATTACTGTATA-TCTTTGG 1863 || || || |||||| |||| ||| || | ||| || || | | | | ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCT 89851377 Query 1864 ACTC-AGATCCAGGTGTCCACATAAATAGTTATGTGGTCCTAATGATCTGGCCCACATTG 1922 || || |||| || ||||||| ||||||||| ||| || ||||| |||||||||| Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1923 TTTTACCTGTGCGACTATCTCCCTCTATCACTAT--ACTGAGAGGTCTCAAAGGCCGCGC 1980 |||||||||| | ||| | ||||| | ||| ||| ||||||| |||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGC 89851495 Query 1981 AGCGGC 1986 |||||| Sbjct 89851496 AGCGGC 89851501 >seq16 Length=188620566 Score = 125 bits (138), Expect = 1e-25 Identities = 188/265 (71%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1722 CTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCACCCA 1781 |||| || ||||| || || | |||||| |||| ||||||||| ||||| ||||| | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1782 TGAACTCCTTAAAGTGCTTTAGGTAATGCGGGTCTACGTCATCAATGACGTTATACCACG 1841 || ||||| |||| |||| | || |||| |||| |||||| |||||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1842 CCTCATTACTGTATATCTTTGGACTCAGATCCAGGTGTCCACATAAATAGTTATGTGGTC 1901 | || ||| | | | | | ||| ||| || | | |||| |||||| |||||| || Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1902 CTAATGATCTGGCCCACATTGTTTTACCTGTGCGACTATCTCCCTCTATCACTAT--ACT 1959 | |||||||| ||||||||||| || || || | ||| || || || | ||| ||| Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1960 GAGAGGTCTCAAAGGCCGCGCAGCG 1984 |||||||||| || || | |||| Sbjct 2249093 --GAGGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 206/302 (68%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1687 TCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTA 1746 |||||| ||||| || | |||||||||||| || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1747 CTTTGTGTTTGATTGCCAGTCCCTTTGGGCACCCATGAACTCCTTAAAGTGCTTTAGGTA 1806 || || || ||||| | | ||| || || || ||||| || ||||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1807 ATGCGGGTCTACGTCATCAATGACGTTATACCACGCCTCATTACTGTATATCTTTGGACT 1866 || || || |||||| |||| ||| || || | || | | | ||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1867 CAGATCCAGGTGTCCACATAAATAGTTATGTGGTCCTAATGATCTGGCCCACATTGTTTT 1926 | |||| || ||||||| ||||||||| ||| || ||||| |||||||||||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1927 ACCTGTGCGACTATCTCCCTCTATCACTAT--ACTGAGAGGTCTCAAAGGCCGCGCAGCG 1984 | ||| | || || | ||| | | | ||| ||||||| |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGCG 165527307 Query 1985 GC 1986 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694258846416