Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_018090.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq16 149 1e-32 seq13 123 4e-25 seq11 107 3e-20 >seq16 Length=188620566 Score = 149 bits (164), Expect = 1e-32 Identities = 193/265 (73%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1711 CTTTAATTTGAACTGGCTTTCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCA 1770 |||| || ||||| || |||| |||||| |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1771 TGAATTCTTTAAAGTGCTTTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCACG 1830 ||||| || |||| |||| | | || |||| |||| |||||| ||||| || | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1831 CTTCGTTATTGTACACTTTCGGACTCAGATCTAAATGGCCACATAAGTAATTATGTGGAC 1890 | |||||| | | || | ||| ||| ||||||| |||| ||| ||||||||| | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1891 CCAACGACCTGGCCCACATTGTCTTCCCCGTCCGACTATCACCTTCAACTACTAT--ACT 1948 |||| || || |||||||||||||| || || | ||||||||||| || ||| ||| Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1949 CACCGGTCTCAAGGGCCGCGCAGCG 1973 | |||||||| || || | |||| Sbjct 2249093 GA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 123 bits (136), Expect = 4e-25 Identities = 211/303 (70%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1677 CCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAATTTGAACTGGCTTTCCGTAC 1736 ||||| ||||| || | ||||||||| ||||| ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1737 TTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAG 1796 || ||| || ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1797 TGCGGGTCTACGTCATCAATGACGTTGTA--CCACGCTTCGTTATTGTACACTTT--CGG 1852 || || || |||||| |||| |||||| | ||| ||||| | | ||||| | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCTT 89851378 Query 1853 ACTCAGATCTAAATGGCCACATAAGTAATTATGTGGACCCAACGACCTGGCCCACATTGT 1912 | || || | ||| ||||||| ||| |||||| ||||| || || ||||||||||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1913 CTTCCCCGTCCGACTATCACCTTCAACTACTATACTCACCGGTCTCAAGGGCCGCGCAGC 1972 || || |||| ||||| ||| | | ||| | ||||||| ||||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGC 89851498 Query 1973 GGC 1975 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 203/299 (68%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1677 CCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAATTTGAACTGGCTTTCCGTAC 1736 ||||| ||||| || | ||||||||| ||||| ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1737 TTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAG 1796 || || || ||||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1797 TGCGGGTCTACGTCATCAATGACGTTGTACCACGCTTCGTTATTGTACACTTTCGGACTC 1856 || || || |||||| |||| |||||| || | ||| | | ||||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1857 AGATCTAAATGGCCACATAAGTAATTATGTGGACCCAACGACCTGGCCCACATTGTCTTC 1916 | || | ||| ||||||| ||| |||||| ||||| || || ||||||||||| || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1917 CCCGTCCGACTATCACCTTCAACTACTATACTCACCGGTCTCAAGGGCCGCGCAGCGGC 1975 | |||| || ||||| | | | | | ||||||| |||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8662259365936