Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_018457.1 Length=2623 Score E Sequences producing significant alignments: (Bits) Value seq13 109 9e-21 seq16 107 3e-20 seq11 77.0 5e-11 >seq13 Length=197258317 Score = 109 bits (120), Expect = 9e-21 Identities = 211/309 (68%), Gaps = 12/309 (4%) Strand=Plus/Plus Query 1557 CCAGGATTGCAAAGTATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCGTAT 1616 || || ||||| ||||| || || | |||||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1617 TTGCAGTTTGATTGCCAGTCTTTTTGAGCACCTATCAATTCCTTCCAATGCTTTAACTTT 1676 |||||||| || ||||| | || |||||| || || || || ||||| ||||| || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA---- 89851316 Query 1677 AGATATTGCGGTGCGATGTCATCTATTACGTTGTACTGCACATCATTTGAATAGAC--CC 1734 ||||| |||| |||||||| || | |||||| | || || ||||| |||| Sbjct 89851317 --GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1735 GCGAATTGAAATCGAGGTGACCGGACAAGTAGTTATGGGACCCTAGCGCACGTGCCCACA 1794 | |||| || | ||||| | | ||||||||| || | | | |||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1795 TGGTCTTCCCCGTTCGAGAGTCACCCTCGATTATTAT--ACTAATAGGTCTTTCCGGCCG 1852 | || || || || | || |||| || || ||||| ||| | ||||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1853 CGCAGCGGC 1861 ||||||||| Sbjct 89851493 CGCAGCGGC 89851501 >seq16 Length=188620566 Score = 107 bits (118), Expect = 3e-20 Identities = 168/241 (70%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 1591 CTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCAGTCTTTTTGAGCACCTA 1650 |||| || ||||| || |||| ||| ||||| |||| |||||||||| |||| ||||| | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1651 TCAATTCCTTCCAATGCTTTAACTTTAGATATTGCGGTGCGATGTCATCTATTACGTTGT 1710 ||||||||||| || ||||| | |||| || | || ||| || ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1711 ACTGCACATCATTTGAATAGACCCGCGAATTGAAATCGAGGTGACCGGACAAGTAGTTAT 1770 | | |||||| || || | ||| | ||| || || | | ||| || || |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1771 GGGACCCTAGCGCACGTGCCCACATGGTCTTCCCCGTTCGAGAGTCACCCTCGATTATTA 1830 | || | | | ||||||||| ||||| || |||| || ||||| || ||||||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1831 T 1831 | Sbjct 2249099 T 2249099 >seq11 Length=168460249 Score = 77.0 bits (84), Expect = 5e-11 Identities = 240/370 (65%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1551 CCCTCGCCAGGATTGCAAAGTATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTT 1610 ||| | || || ||||| || || || || | |||||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1611 CCGTATTTGCAGTTTGATTGCCAGTCTTTTTGAGCACCTATCAATTCCTTCCAATGCTTT 1670 ||||||||||||| || ||||| | | |||||| || || || || ||||| ||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1671 AACTTTAGATATTGCGGTGCGATGTCATCTATTACGTTGTACTGCACATCATTTGAATAG 1730 || ||||| |||| |||||||| || | |||||| | | | ||||| || Sbjct 165527489 AA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1731 ACCCGCGAATTGAAATCGAGGTGACCGGACAAGTAGTTATGGGACCCTAGCGCACGTGCC 1790 || ||| || | ||||| | | ||||||||| || | | | |||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1791 CACATGGTCTTCCCCGTTCGAGAGTCACCCTCGATTATTAT--ACTAATAGGTCTTTCCG 1848 ||||| || || | || | || | ||| | || ||| | ||| | ||||| || Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1849 GCCGCGCAGCGGCACCTCTCCCAAAATAATCATTGACCCAATCTTGCATCTCCTGTGGAA 1908 ||||||||||||| | ||||| || || |||| ||||||| || | ||| | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1909 CTAAAGTGAA 1918 | |||||| Sbjct 165527257 CATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8284665496272