Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_018716.1 Length=2616 Score E Sequences producing significant alignments: (Bits) Value seq11 141 2e-30 seq16 140 5e-30 seq13 138 2e-29 >seq11 Length=168460249 Score = 141 bits (156), Expect = 2e-30 Identities = 325/485 (67%), Gaps = 12/485 (2%) Strand=Plus/Minus Query 1554 CCCTCTCCTGGATTGCACAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTT 1613 ||| ||||||| ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1614 CCATATTTACAGTTGGATTGCCAATCCTTTTGGGCCCCAATCAACTCTTTCCAGTGCTTT 1673 || ||||| |||| || ||||||| ||| || ||||| ||||||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1674 AGCTTTAGGTACTGCGGAGTGACATCATCGATAACGTTATACTCCACATCATTGGAGTAA 1733 || | | ||| || || | | |||||||| | ||| || || | | || ||| | Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1734 ACCCTAGCATTGAAATCAAGATGACCGCTCAGATAATTATGTGTACCTAAAGCTCTGGCC 1793 || | ||| || | |||||| | | || |||||| | || |||| ||| ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1794 CACATTGTCTTTCCCGTTCTAGAACCCCCTTCGACGAT--CAAACTAATAGGACGTTCTG 1851 |||||||| || | || || ||| |||| | ||| ||| | || | | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1852 GCCGCGCAGCGGCATCAACACTGAAATAGTCATCAGCCCATTCTTGCATCTCGTCTGGCA 1911 ||||||||||||| | | || || || ||| ||||||||||||| || ||||| | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1912 CAGCAGTAAATGAAGATAGCTGAAATGGAGGGACCCACGGAGGTGGAGGTTTAGCAAATA 1971 || ||| || |||| | | |||||| ||||| |||| || ||| | || | | Sbjct 165527257 CATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTTCATAGA 165527198 Query 1972 TACGTTCTAGGTTTGAACGTAACG-TGTGCTGCTGGAGCACGAAGTCTTTGGGCTGCTCT 2030 | || ||| ||| | | | | |||| ||||| | || |||||| |||| || || Sbjct 165527197 CTCTATCCAGG-TTGTAGTTGATGTTGTGATGCTGTAACAGAAAGTCTCTGGGTTGTTCA 165527139 Query 2031 TCTCT 2035 ||||| Sbjct 165527138 TCTCT 165527134 >seq16 Length=188620566 Score = 140 bits (154), Expect = 5e-30 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 1594 CTTTAATTTGAACTGGCTTTCCATATTTACAGTTGGATTGCCAATCCTTTTGGGCCCCAA 1653 |||| || ||||| || |||| || || || || | |||||| || |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1654 TCAACTCTTTCCAGTGCTTTAGCTTTAGGTACTGCGGAGTGACATCATCGATAACGTTAT 1713 || || |||||||| |||| | || || | || | ||| |||||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACAT------TGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1714 ACTCCACATCATTGGAGTAAACCCTAGCATTGAAATCAAGATGACCGCTCAGATAATTAT 1773 | |||||||| || ||| ||||| ||| ||| || || | || ||| || | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1774 GTGTACCTAAAGCTCTGGCCCACATTGTCTTTCCCGTTCTAGAACCCCCTTC 1825 || | || || | ||| ||||||||||||||||| ||||| ||| | ||||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTC 2249108 >seq13 Length=197258317 Score = 138 bits (152), Expect = 2e-29 Identities = 253/368 (69%), Gaps = 12/368 (3%) Strand=Plus/Plus Query 1558 CTCCTGGATTGCACAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCAT 1617 ||||||| ||||| || | ||||| ||| || |||||||| | || |||||| | | Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1618 ATTTACAGTTGGATTGCCAATCCTTTTGGGCCCCAATCAACTCTTTCCAGTGCTTTAGCT 1677 |||| ||||| || ||||||| | ||| || ||||| ||||||||||||| ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1678 TTAGGTACTGCGGAGTGACATCATCGATAACGTTATACTCCACATCATTGGAGTAAACCC 1737 | | ||| || || | | |||||||| | ||| || || || || || ||| | || Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1738 TAGC--ATTGAAATCAAGATGACCGCTCAGATAATTATGTGTACCTAAAGCTCTGGCCCA 1795 | | |||| || | |||||| | | || |||||| | || |||| ||| ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1796 CATTGTCTTTCCCGTTCTAGAACCCCCTTCGACGATCA--AACTAATAGGACGTTCTGGC 1853 |||||| || || || || ||| | | ||| | ||| | ||| | || | ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1854 CGCGCAGCGGCATCAACACTGAAATAGTCATCAGCCCATTCTTGCATCTCGTCTGGCACA 1913 ||||||||||| | | | || || ||| ||||||| ||||| || ||||| ||| Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1914 GCAGTAAA 1921 ||| || Sbjct 89851551 TTAGTGAA 89851558 Score = 84.2 bits (92), Expect = 4e-13 Identities = 449/704 (64%), Gaps = 20/704 (3%) Strand=Plus/Plus Query 1767 TAATTATGTGTACCTAAAGCTCTGGCCCACATTGTCTTTCCCGTTCTAGAACCCCCTTCG 1826 || |||||| | || | | ||| ||||||||||| || || ||||| ||| ||||| Sbjct 172133974 TAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCTGGAATTACCTTCT 172134033 Query 1827 ACGATCAA--ACTAATAGGACGTTCTGGCCGCGCAGCGGCATCAACACTGAAATAGTCAT 1884 | ||| | ||| | || | | ||||| |||||||| | | || || || || Sbjct 172134034 ATGATTACTGACT--TTGGTCTCACCGGCCGTGCAGCGGCTTGTATACCAAAGTATGAAT 172134091 Query 1885 CAGCCCATTCTTGCATCTCGTCTGGCACAGCAGTAAATGAAGATAGCTGAAATGGAGGGA 1944 | ||||||||||||| || ||| | ||| ||| || |||| | | |||||| | Sbjct 172134092 CTGCCCATTCTTGCAGGTCTTCTAGTACATTAGTGAAGCTTGATAACGGGAATGGACATA 172134151 Query 1945 CCCACGGAGGTGGAGGTTTAGCAAATATACGTTCTAGGTTTGAACGTAACG-TGTGCTGC 2003 |||| |||| || |||| | || | | | || ||| ||||| | | | |||| ||| Sbjct 172134152 CCCATGGAGCTGTAGGTATTTCATAGACTCTATCCAGG-TTGAAGTTGATGTTGTGATGC 172134210 Query 2004 TGGAGCACGAAGTCTTTGGGCTGCTCTTCTCTGAGTATATTGAGGGCCTCGGAGACAGAG 2063 || | | |||||| |||| || || ||||| | | | | |||||| || | Sbjct 172134211 TGTAAGAGAAAGTCTCTGGGTTGTTCATCTCTAATAACCTGCAATGCCTCGTCTTTAGCG 172134270 Query 2064 TTTGAGTTGAGAACCTTGGCATAGGAGTCATTGGCAGATTGTTGACCT--CCTCTGGAGG 2121 || | || | || | || | |||| ||| | || ||||| | Sbjct 172134271 TTGCACACCAGTGCTCTGCCGTATGTTGTGTTGG--GATCGAAATTCTGATTTCTGGTAG 172134328 Query 2122 AACGGGGATCGATTTGAAATTCTCCAAAATCAATGAAGTCTCCGTCTTTCTCCACGTAGG 2181 | || | ||||| || | || || | || |||||||||| || ||| Sbjct 172134329 ATGTTCCATGTTTCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTCTGCATGTATC 172134388 Query 2182 TCTTGACATCAGATGCT-GATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTG 2240 | ||||| ||| || |||||||| ||| |||| |||||| || | | ||| | Sbjct 172134389 TTCTGACA-AAGAAACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTCAGACGTA 172134447 Query 2241 GTTGGGGAGACGAGGTCGAAGAATCTTTCATTAGCACATTGGTATTTACCTTCGAACTGG 2300 ||||| |||||| ||||||||| ||| ||||| | |||| ||| | ||| Sbjct 172134448 TTTGGGTGATTGAGGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTTCCATCTGC 172134507 Query 2301 ATAAGCACATGGAGATGAGGCTCCCCATTTTCGTGTAATTCTCTGGACACA-CGA---AT 2356 || | ||||| |||||||||| | | |||||| | |||| || | | | ||| || Sbjct 172134508 ATCAAAACATGAAGATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATAGCGATATAT 172134567 Query 2357 AAACTTGATATTTGTAGGTGTT--TTTAACTTCTGTAATTGCAAAAGAGCCCCTTCTTTT 2414 | ||||||| || ||| || | |||| | | ||| |||| |||||| Sbjct 172134568 ATACTTGATCGCTGAAGGAATTGGTAGAACT--TTCAGTTGTTCAAGATAATATTCTTTG 172134625 Query 2415 GTTAAAGAGCACCTAGGGTATGTGAGGAAATAGTTTTTGGCGTT 2458 | || | |||| | |||||||||| ||| ||||| ||||| || Sbjct 172134626 GATACATAGCATTTTGGGTATGTGATGAAGTAGTTCTTGGCATT 172134669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8262265859936