Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_018717.1 Length=2599 Score E Sequences producing significant alignments: (Bits) Value seq16 176 7e-41 seq13 134 2e-28 seq11 116 6e-23 >seq16 Length=188620566 Score = 176 bits (194), Expect = 7e-41 Identities = 245/339 (72%), Gaps = 16/339 (5%) Strand=Plus/Minus Query 1574 CTTTAATTTGAACTGGCTTTCCGTACTTACAATTTGATTGCCAGTCTTTTTGGGCCCCAA 1633 |||| || ||||| || |||| |||||| || |||| |||||||||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1634 GGAGTTCTTTCCAGTGCTTTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTAT 1693 | | ||| |||||||| |||| | | || || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1694 ACTCCACTGCATTTGAATAGACCCTAGAATTGAAATCAAGATGACCGCTCAAGTAATTAT 1753 | ||||| | || || | ||| ||| ||| || || | || ||| || || ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1754 GTGGGCCTAAGACCCTAGCCCACATCGTCTTCCCTGTTCTTGAATCACCTTCGACTATGA 1813 || || || || |||||||| ||||| || ||||||||||||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1814 --GACTCAATGGTCTTTCTGGCCGCGCAGCGGGACT-TC--TTCCAAAATAATCATCTGC 1868 |||| | ||||| ||| || | |||| || || | ||||||||||||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCG---CTGTCGGATGAAAAATAATCATCTGC 2249045 Query 1869 CCACTCTTGCATCTCGTCGGGAACGTTAGTGAAAGAGGA 1907 ||| | |||||| | | || ||||| |||||||| || Sbjct 2249044 CCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 134 bits (148), Expect = 2e-28 Identities = 259/376 (69%), Gaps = 16/376 (4%) Strand=Plus/Plus Query 1532 AACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCT 1591 |||| | || || ||||| || | ||||| ||| || |||||||| | || ||||| Sbjct 89851193 AACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCT 89851252 Query 1592 TTCCGTACTTACAATTTGATTGCCAGTCTTTTTGGGCCCCAAGGAGTTCTTTCCAGTGCT 1651 | |||| || || || || ||||| | || ||| || |||| | ||||||||||||| Sbjct 89851253 TGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCT 89851312 Query 1652 TTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTATACTCCACTGCATTTGAAT 1711 | | || || || |||| | |||||| |||| ||| || || || | ||||| Sbjct 89851313 TGA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGA 89851366 Query 1712 AGACCCTAGAAT--TGAAATCAAGATGACCGCTCAAGTAATTATGTGGGCCTAAGACCCT 1769 |||| | | ||| || | |||||| | | ||| |||||| || || || Sbjct 89851367 AGACTTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCT 89851426 Query 1770 AGCCCACATCGTCTTCCCTGTTCTTGAATCACCTTCGACTATGA--GACTCAATGGTCTT 1827 |||||||| || || ||||| || ||||||| ||| | || | |||| |||||| Sbjct 89851427 TGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTC 89851484 Query 1828 TCTGGCCGCGCAGCGGGACTTCT--TCCAAAATAATCATCTGCCCACTCTTGCATCTCGT 1885 ||||||||||||| ||| | |||||| || ||||||||| | ||||| || | Sbjct 89851485 ATCGGCCGCGCAGCGG--CTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTT 89851542 Query 1886 CGGGAACGTTAGTGAA 1901 | || || |||||||| Sbjct 89851543 CTGGTACATTAGTGAA 89851558 >seq11 Length=168460249 Score = 116 bits (128), Expect = 6e-23 Identities = 255/377 (68%), Gaps = 20/377 (5%) Strand=Plus/Minus Query 1532 AACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCT 1591 ||||| | || || ||||| |||| ||||| ||| || |||||||| | || ||||| Sbjct 165527611 AACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCT 165527552 Query 1592 TTCCGTACTTACAATTTGATTGCCAGTCTTTTTGGGCCCCAAGGAGTTCTTTCCAGTGCT 1651 | ||||| || || | || ||||| | | ||| || |||| | |||||||||||| Sbjct 165527551 TGCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCA 165527492 Query 1652 TTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTATACTCCACTGCATTTGAAT 1711 | | || || || |||| | |||||| |||| ||| || || | ||||| Sbjct 165527491 TGA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGA 165527438 Query 1712 AGACCCTAGAATTGAAATCAAGATGACCGCTCAAGTAATTATGTGGGCCTAAGACCCTAG 1771 |||| | ||| || | |||||| | | ||| |||||| || || || | Sbjct 165527437 AGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTG 165527378 Query 1772 CCCACATCGTCTTCCCTGTTCTTGAATCACCTTCGACTATGA-----GACTCAATGGTCT 1826 ||||||| || || | ||| || |||| ||||| ||||| |||| |||||| Sbjct 165527377 CCCACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACT--TTGGTCT 165527323 Query 1827 TTCTGGCCGCGCAGCGGGACTTCT--TCCAAAATAATCATCTGCCCACTCTTGCATCTCG 1884 ||||||||||||| ||| | ||||| || ||||||||| ||||||| || Sbjct 165527322 CATCGGCCGCGCAGCGG--CTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCT 165527265 Query 1885 TCGGGAACGTTAGTGAA 1901 || || || |||||||| Sbjct 165527264 TCTGGTACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8207866743120