Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_019034.1 Length=2781 Score E Sequences producing significant alignments: (Bits) Value seq13 113 8e-22 seq11 107 3e-20 >seq13 Length=197258317 Score = 113 bits (124), Expect = 8e-22 Identities = 209/304 (69%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1695 CCAGGATTGCAGAGGAAGATTGTCGGGATTCCGCCTTTAATTTGAATTGGCTTGCCGTAT 1754 || || ||||| || | |||||| || || || ||||| | || |||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1755 TTCGTGTTGCTTTGCCAATCACGCTGGGCCCCCATGAACTCTTTGAAATGTTTTAGATAG 1814 || ||| ||||||| | || || || || |||||||| | || || | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1815 TGCGGATCCACGTCGTCGATGATGTTGTACCAGGCGTCATTTGAATAGAC--CTTGGGAC 1872 || || | ||| |||||||||||||| |||| ||||| |||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1873 TAATGTCCAAATGACCACATAAGTAATTATGTGGACCCAGGCTTCGTGCCCACATTGTTT 1932 | | ||||| ||||||||||| ||| |||||| |||| || |||||||||||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1933 TGCCCGTACGACTATCGCCCTCGATAACAAT--ACTTTTAGGTCTCCATGGCCGCGCAGC 1990 | || || | ||| | || || | || ||||| |||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 1991 GGCT 1994 |||| Sbjct 89851499 GGCT 89851502 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 206/302 (68%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1695 CCAGGATTGCAGAGGAAGATTGTCGGGATTCCGCCTTTAATTTGAATTGGCTTGCCGTAT 1754 || || ||||| || | |||||| || || || ||||| | || |||||||||||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1755 TTCGTGTTGCTTTGCCAATCACGCTGGGCCCCCATGAACTCTTTGAAATGTTTTAGATAG 1814 || || ||||||| || || || || || |||||||| | || | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1815 TGCGGATCCACGTCGTCGATGATGTTGTACCAGGCGTCATTTGAATAGACCTTGGGACTA 1874 || || | ||| |||||||||||||| |||| ||||| |||| || | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1875 ATGTCCAAATGACCACATAAGTAATTATGTGGACCCAGGCTTCGTGCCCACATTGTTTTG 1934 ||||| ||||||||||| ||| |||||| |||| || |||||||||||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1935 CCCGTACGACTATCGCCCTCGATAACAAT--ACTTTTAGGTCTCCATGGCCGCGCAGCGG 1992 | || | || || | || | | ||||| |||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1993 CT 1994 || Sbjct 165527305 CT 165527304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8787053143920