Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_019569.1 Length=2647 Score E Sequences producing significant alignments: (Bits) Value seq13 174 3e-40 seq11 168 1e-38 seq16 109 9e-21 >seq13 Length=197258317 Score = 174 bits (192), Expect = 3e-40 Identities = 261/368 (71%), Gaps = 12/368 (3%) Strand=Plus/Plus Query 1574 CTCCAGGATTGCATAGCACGATTGAAGGGACCCCACCTTCAATCACTCTTGGCTTTCCGT 1633 |||| || |||||||| | ||||| || | || |||| | | |||||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1634 ATTTACAGTTTGACTGCCACTTCTTTTGAGAGCCAATCAGTTCTTTCCAGTGTTTCAACT 1693 |||| ||||| |||||||| || | ||||| ||||| | ||||||||||| || Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTG------CT 89851312 Query 1694 TTAGGTAATGCGGTGGTACGTCATCAATGACGTTATACTCCACTTCGTCTGAGTAGACCT 1753 | | ||| || ||||||| |||||| |||| ||| || || || |||| |||| |||| | Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1754 TT--GAGTTGAAATCCAGGTGTCCACTTAGGTAATTGTGTGGGCCTAAGGCACGAGCCCA 1811 || |||| |||| || |||| || ||| || ||| || || | | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1812 CATCGTCTTCCCTGTCCTTGAATCACCTTCAACGATGAT--ACTAAGTGGTCTCTCAGGC 1869 ||| || || |||||||| ||||||| ||| | ||| || ||| ||||||| ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1870 CGCGCAGCGGAACCTCTCCCAAAATAATCATCCGCCCACTCTTGCATCTCGTCGGGAACG 1929 |||||||||| | ||||| || ||| ||||| | ||||| || || || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1930 TTAGTGAA 1937 |||||||| Sbjct 89851551 TTAGTGAA 89851558 >seq11 Length=168460249 Score = 168 bits (186), Expect = 1e-38 Identities = 327/481 (68%), Gaps = 10/481 (2%) Strand=Plus/Minus Query 1570 CCCTCTCCAGGATTGCATAGCACGATTGAAGGGACCCCACCTTCAATCACTCTTGGCTTT 1629 ||| |||| || |||||||||| ||||| || | || |||| | | |||||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1630 CCGTATTTACAGTTTGACTGCCACTTCTTTTGAGAGCCAATCAGTTCTTTCCAGTGTTTC 1689 |||||||| |||| |||||||| || ||||| ||||| | ||||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG---- 165527494 Query 1690 AACTTTAGGTAATGCGGTGGTACGTCATCAATGACGTTATACTCCACTTCGTCTGAGTAG 1749 | | | ||| || ||||||| |||||| |||| ||| || || | | || |||| || Sbjct 165527493 --CATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1750 ACCTTTGAGTTGAAATCCAGGTGTCCACTTAGGTAATTGTGTGGGCCTAAGGCACGAGCC 1809 || ||| |||| |||| || |||| || ||| || ||| || || | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1810 CACATCGTCTTCCCTGTCCTTGAATCACCTTCAACGATGAT--ACTAAGTGGTCTCTCAG 1867 ||||| || || | |||||| |||| ||||| | ||| | ||| ||||||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1868 GCCGCGCAGCGGAACCTCTCCCAAAATAATCATCCGCCCACTCTTGCATCTCGTCGGGAA 1927 |||||||||||| | ||||| || ||| ||||| ||||||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1928 CGTTAGTGAATGAGGAGAGTTGAAACGGAGGGGCCCATGGCTCCGGAGCCTTTGCGAATA 1987 | |||||||| || | | || ||| ||||||| | | || || | | | Sbjct 165527257 CATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTTCATAGA 165527198 Query 1988 TCCTTTCGAGGTTGGAGCGGATGTTATGATTCTGCAGGACAAAATCTTTTGGCTGTTCTT 2047 || || |||||| || |||||| |||| ||| | | ||| ||| | || ||||| | Sbjct 165527197 CTCTATCCAGGTTGTAGTTGATGTTGTGATGCTGTAACAGAAAGTCTCTGGGTTGTTCAT 165527138 Query 2048 C 2048 | Sbjct 165527137 C 165527137 >seq16 Length=188620566 Score = 109 bits (120), Expect = 9e-21 Identities = 222/326 (68%), Gaps = 18/326 (6%) Strand=Plus/Minus Query 1624 GGCTTTCCGTATTTACAGTTTGACTGCCACTTCTTTTGAGAGCCAATCAGTTCTTTCCAG 1683 || |||| ||| || || |||| ||||| | |||| | |||| | ||| |||||| Sbjct 2249319 GGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAAGTAATTCCTTCCAG 2249260 Query 1684 TGTTTCAACTTTAGGTAATGCGGTGGTACGTCATCAATGACGTTATACTCCACTTCGTCT 1743 ||||| || | | || | | |||| |||||| |||||||| ||||| |||| Sbjct 2249259 TGTTTTAAACATTG----TGGGTTA--ACGTTATCAATAACGTTATATTCCACATCGTTA 2249206 Query 1744 GAGTAGACCTTTGAGTTGAAATCCAGGTGTCCACTTAGGTAATTGTGTGGGCCTAAGGCA 1803 ||| | ||| | | || || || | | ||||||| ||||| ||| || || | Sbjct 2249205 GAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTCCCAATGAT 2249146 Query 1804 CGAGCCCACATCGTCTTCCCTGTCCTTGAATCACCTTCAACGATGAT--ACTAAGTGGTC 1861 | |||||||| ||||| || || |||||||||||||||| || || ||| | |||| Sbjct 2249145 CTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT--GAGGTC 2249088 Query 1862 TCTCAGGCCGCGCAGCGGAACCTCTC----CCAAAATAATCATCCGCCCACTCTTGCATC 1917 || || || | |||| || || |||||||||||| ||||| | |||||| Sbjct 2249087 TCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTGCCCATTTTTGCATA 2249032 Query 1918 TCGTCGGGAACGTTAGTGAATGAGGA 1943 | | || ||||| ||||| || || Sbjct 2249031 ACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8361464249424