Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_019946.1 Length=2574 Score E Sequences producing significant alignments: (Bits) Value seq13 205 2e-49 seq11 172 9e-40 seq16 165 1e-37 >seq13 Length=197258317 Score = 205 bits (226), Expect = 2e-49 Identities = 318/450 (71%), Gaps = 16/450 (4%) Strand=Plus/Plus Query 1428 AGGAAGATGAATTTAGCATTTTTGAGAGTCCACTGTTTTAGTGACGCATTTTCCTC--TT 1485 ||||||||||| ||||||||||||| ||||||| ||| || || || | | || Sbjct 89851111 AGGAAGATGAACATAGCATTTTTGAGGGTCCACTATTTCAG--ACCCAACATGCATGGTT 89851168 Query 1486 TGTCGAGGAAATCTTTATAGCTCCCCCCGTCTCCTGGATTGCACAGCACGATTGATGGTA 1545 ||| | | ||| ||| || ||||||| ||||| || | ||||| ||||| Sbjct 89851169 TGTTCAAGTGATCCCAATATGAAAAACCAACTCCTGGGTTGCATAGTATGATTGTTGGTA 89851228 Query 1546 TGCCCCCTTTAATTTGAACTGGCTTGCCGTACTTACAGTTGGACTGCCAATCTTTCTGGG 1605 |||| ||||| | || ||||||| |||| || ||||| |||||||||| || || | Sbjct 89851229 TGCCTCCTTTGACAAGACTTGGCTTGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAG 89851288 Query 1606 CCCCAATCAACTCTTTCCAGTGCTTTAACTTTAAGTAGTGCGGTGCGACGTCATCGATGA 1665 | ||||| |||||||||||||| ||| ||||| || |||| | ||||||||||| Sbjct 89851289 CTCCAATAAACTCTTTCCAGTG------CTTGAAGTATTGTGGTGGTATGTCATCGATGA 89851342 Query 1666 CGTTATATTCCACTTCGTTCGAGTAAAC--CCTAGAATTGAAATCTAAATGACCACTCAA 1723 ||| || || || ||||| ||| | || | |||| || | |||||||| | Sbjct 89851343 TGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCTTGAGGTCCATATGACCACATAC 89851402 Query 1724 GTAATTATGTGGGCCTAAAGAACGAGCCCACATTGTCTTCCCTGTTCTTGAATCACCCTC 1783 ||| |||||| || ||||| | ||||||||||| || ||||| || ||||||| || Sbjct 89851403 GTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTTTACCTGTCCTGGAATCACTTTC 89851462 Query 1784 GACGATGAT--ACTAATAGGTCTTTCCGGCCGCGCAGCGGCACCTCTTCCAAAATAATCA 1841 | ||| || ||| | ||||| ||||||||||||||| | |||||| || | Sbjct 89851463 TATGATTATTGACT--TTGGTCTCATCGGCCGCGCAGCGGCTTGTAGTCCAAAGTATGAA 89851520 Query 1842 TCAGCCCATTCCTGCATCTCGTCAGGAACA 1871 || ||||||| |||| || || || ||| Sbjct 89851521 TCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Score = 96.9 bits (106), Expect = 6e-17 Identities = 159/226 (70%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 1634 CTTTAAGTAGTGCGGTGCGACGTCATCGATGACGTTATATTCCACTTCGTTCGAGTAAAC 1693 ||| ||||| || |||| | ||||||||||| ||| || || | | ||| ||| | || Sbjct 172133884 CTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGAC 172133943 Query 1694 CCTAGAATTGAAATCTAAATGACCACTCAAGTAATTATGTGGGCCTAAAGAACGAGCCCA 1753 | |||| || || || |||| | ||| |||||| || | || | ||||| Sbjct 172133944 TTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCA 172134002 Query 1754 CATTGTCTTCCCTGTTCTTGAATCACCCTCGACGATGATACTAA--TAGGTCTTTCCGGC 1811 |||||| || |||||||| |||| ||| || | ||| |||| | | ||||| ||||| Sbjct 172134003 CATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGGC 172134060 Query 1812 CGCGCAGCGGCACCTCTTCCAAAATAATCATCAGCCCATTCCTGCA 1857 || |||||||| | | ||||| || ||| |||||||| |||| Sbjct 172134061 CGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCA 172134106 >seq11 Length=168460249 Score = 172 bits (190), Expect = 9e-40 Identities = 254/358 (71%), Gaps = 10/358 (3%) Strand=Plus/Minus Query 1516 CTCCTGGATTGCACAGCACGATTGATGGTATGCCCCCTTTAATTTGAACTGGCTTGCCGT 1575 ||||||| ||||| |||| ||||| ||||||||| ||||| | || ||||||||||| Sbjct 165527605 CTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGT 165527546 Query 1576 ACTTACAGTTGGACTGCCAATCTTTCTGGGCCCCAATCAACTCTTTCCAGTGCTTTAACT 1635 | || |||| |||||||||| | || || ||||| |||||||||||||| | Sbjct 165527545 ATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG------CA 165527492 Query 1636 TTAAGTAGTGCGGTGCGACGTCATCGATGACGTTATATTCCACTTCGTTCGAGTAAACCC 1695 | ||||| || |||| | ||||||||||| ||| || || | | ||| ||| | || Sbjct 165527491 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTT 165527432 Query 1696 TAGAATTGAAATCTAAATGACCACTCAAGTAATTATGTGGGCCTAAAGAACGAGCCCACA 1755 | ||| || | |||||||| | ||| |||||| || ||||| | ||||||| Sbjct 165527431 TTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACA 165527372 Query 1756 TTGTCTTCCCTGTTCTTGAATCACCCTCGACGATGAT--ACTAATAGGTCTTTCCGGCCG 1813 |||| || | ||| || |||| ||| | | ||| | ||| | ||||| |||||| Sbjct 165527371 TTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCG 165527314 Query 1814 CGCAGCGGCACCTCTTCCAAAATAATCATCAGCCCATTCCTGCATCTCGTCAGGAACA 1871 ||||||||| | ||||| || ||| |||||||| |||| || || || ||| Sbjct 165527313 CGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTACA 165527256 >seq16 Length=188620566 Score = 165 bits (182), Expect = 1e-37 Identities = 224/309 (72%), Gaps = 10/309 (3%) Strand=Plus/Minus Query 1552 CTTTAATTTGAACTGGCTTGCCGTACTTACAGTTGGACTGCCAATCTTTCTGGGCCCCAA 1611 |||| || ||||| || || | |||||| || || | ||||| ||| | || || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1612 TCAACTCTTTCCAGTGCTTTAACTTTAAGTAGTGCGGTGCGACGTCATCGATGACGTTAT 1671 || || |||||||| ||||| | | ||| | | |||| ||| || ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1672 ATTCCACTTCGTTCGAGTAAACCCTAGAATTGAAATCTAAATGACCACTCAAGTAATTAT 1731 ||||||| ||||| ||| ||||| ||| ||| || ||||||| |||||| || ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1732 GTGGGCCTAAAGAACGAGCCCACATTGTCTTCCCTGTTCTTGAATCACCCTCGACGATGA 1791 || || || || | |||||||||||||| || |||||||||||||| || | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1792 T--ACTAATAGGTCTTTCCGGCCGCGCAGCGGCACCTCTTCCAAAATAATCATCAGCCCA 1849 | ||| |||||| || || | |||| | | |||||||||||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1850 TTCCTGCAT 1858 || ||||| Sbjct 2249041 TTTTTGCAT 2249033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8127868041920