Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_020236.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq13 100 5e-18 seq11 91.5 3e-15 >seq13 Length=197258317 Score = 100 bits (110), Expect = 5e-18 Identities = 208/304 (68%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 1677 CCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1736 || || ||||| || | |||||| ||||| || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1737 TTAGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAG 1796 || ||| || ||||| | ||| || || || |||||||| ||||||||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1797 TGCGGGTCGACGTCATCAATGACGTTG-AACCAAGCATCATTACTGTATACCTTTGGAC- 1854 || || | |||||| |||| |||| || ||| | || || | | || ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAA-CGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1855 -TCAGATCTAAATGACCACACAGATAGTTGTGTGGGCCTAGTGACCTAGCCCACATCGTC 1913 | || || | ||||||||| | ||||| ||| || | || || |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1914 TTCCCGGTTCTACTATCTCCCTCAATGACTAT--ACTTTGAGGTCTTAAAGGCCGCGCAG 1971 || || || || ||| | || |||| ||| |||||| |||| | |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTG--GTCTCATCGGCCGCGCAG 89851497 Query 1972 CGGC 1975 |||| Sbjct 89851498 CGGC 89851501 >seq11 Length=168460249 Score = 91.5 bits (100), Expect = 3e-15 Identities = 232/349 (66%), Gaps = 7/349 (2%) Strand=Plus/Minus Query 1677 CCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1736 || || ||||| || | |||||| ||||| || ||||| | || |||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1737 TTAGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAG 1796 || || || ||||| | | ||| || || || |||||||| ||||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1797 TGCGGGTCGACGTCATCAATGACGTTGAACCAAGCATCATTACTGTATACCTTTGGACTC 1856 || || | |||||| |||| |||| | ||| | || | | || ||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1857 AGATCTAAATGACCACACAGATAGTTGTGTGGGCCTAGTGACCTAGCCCACATCGTCTTC 1916 | || | ||||||||| | ||||| ||| || | || || |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1917 CCGGTTCTACTATCTCCCTCAATGACTAT--ACTTTGAGGTCTTAAAGGCCGCGCAGCGG 1974 | || || || || | |||| | | |||||| |||| | ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTG--GTCTCATCGGCCGCGCAGCGG 165527306 Query 1975 C--ATTGACGACGTTATG-GGCCGCCCATTCATCAAGTTCTTCTGGAAC 2020 | | ||| | |||| | |||||||| | || |||||||| || Sbjct 165527305 CTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTAC 165527257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8684659002272