Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_020253.1 Length=2676 Score E Sequences producing significant alignments: (Bits) Value seq16 205 2e-49 seq13 149 1e-32 seq11 123 4e-25 >seq16 Length=188620566 Score = 205 bits (226), Expect = 2e-49 Identities = 242/327 (74%), Gaps = 7/327 (2%) Strand=Plus/Minus Query 1655 TGAACTGGCTTTTCCGTACTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAACTC 1714 ||||| || ||||| ||||||||| |||| ||||||||| |||| ||||||| || || Sbjct 2249325 TGAACCGG-TTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAAGTAATTC 2249267 Query 1715 CTTCCAGTGCTTTAACTTTAGATATTGCGGGTTGACGTCATCAATGACGTTGTATTCCAC 1774 ||||||||| ||||| | |||| ||||| |||| |||||| ||||| |||||||| Sbjct 2249266 CTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTATATTCCAC 2249213 Query 1775 TTCGTTCGAGTAAACCCTAGAATTGAAGTCGAGATGACCACTCAAGTAATTATGTGGGCC 1834 ||||| ||| ||||| ||| ||| ||||| | || |||||| || ||||||||| || Sbjct 2249212 ATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTCC 2249153 Query 1835 TAACGCACGAGCCCACATCGTCTTCCCTGTTCGACTATCACCTTCGACTATCAAACTCAT 1894 || | | |||||||| ||||| || |||| ||||||||| | ||| | | Sbjct 2249152 CAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACTG 2249093 Query 1895 AGGTCTCAATGGCCGCGCAGCGGAACCCCTTCCAAAATACTCATCCGCCCACTCTTGCAT 1954 |||||||||||| || | |||| | | |||||| ||||| ||||| | |||||| Sbjct 2249092 AGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCATTTTTGCAT 2249033 Query 1955 CTCGTCGGGAACGTTAGTGAAGGAGGA 1981 | | || ||||| ||||| || || Sbjct 2249032 AACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 149 bits (164), Expect = 1e-32 Identities = 267/385 (69%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 1612 CCTGGATTGCAGAGCACGATTGATGGTATCCCACCTTTAATTTTGAACTGGCTTTTCCGT 1671 ||||| ||||| || | ||||| |||||| || ||||| | || |||||| || || Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAA-GACTTGGCTTGTC-GT 89851258 Query 1672 ACTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAACTCCTTCCAGTGCTTTAACT 1731 | ||||| || |||||||| | || |||||| ||||| ||||| ||||||||||| || | Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1732 TTAGATATTGCGGGTTGACGTCATCAATGACGTTGTATTCCACTTCGTTCGAGTAAACCC 1791 | | || ||| | |||||| |||| |||||| || || ||||| ||| | || Sbjct 89851319 ATTG----TGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1792 TAGAAT--TGAAGTCGAGATGACCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCA 1849 | | ||| ||| | |||||||| | ||| |||||| || || | | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1850 CATCGTCTTCCCTGTTCGACTATCACCTTCGACTATCAAACTCATAGGTCTCAATGGCCG 1909 ||| || || ||||| | ||||| ||| | || | | | ||||||| ||||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCG 89851492 Query 1910 CGCAGCGGAACCCCTTCCAAAATACTCATCCGCCCACTCTTGCATCTCGTCGGGAACGTT 1969 |||||||| |||||| || ||| ||||| | ||||| || || || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1970 AGTGAAGGAGGATAGGGGAAACGGA 1994 ||||||| |||| || || ||| Sbjct 89851553 AGTGAAGCTTGATAATGGGAATGGA 89851577 >seq11 Length=168460249 Score = 123 bits (136), Expect = 4e-25 Identities = 266/394 (68%), Gaps = 8/394 (2%) Strand=Plus/Minus Query 1612 CCTGGATTGCAGAGCACGATTGATGGTATCCCACCTTTAATTTTGAACTGGCTTTTCCGT 1671 ||||| ||||| |||| ||||| |||||| || ||||| | || |||||| |||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAA-GACTTGGCTTG-CCGT 165527546 Query 1672 ACTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAACTCCTTCCAGTGCTTTAACT 1731 | ||||| | |||||||| | | |||||| ||||| ||||| ||||||||| | || | Sbjct 165527545 ATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1732 TTAGATATTGCGGGTTGACGTCATCAATGACGTTGTATTCCACTTCGTTCGAGTAAACCC 1791 | | || ||| | |||||| |||| |||||| || | | ||| ||| | || Sbjct 165527485 ATTG----TGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTT 165527432 Query 1792 TAGAATTGAAGTCGAGATGACCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCACA 1851 | ||| ||| | |||||||| | ||| |||||| || || | | ||||||| Sbjct 165527431 TTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACA 165527372 Query 1852 TCGTCTTCCCTGTTCGACTATCACCTTCGACTATCAAACTCATAGGTCTCAATGGCCGCG 1911 | || || | ||| | || ||||| | || | | ||||||| ||||||| Sbjct 165527371 TTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCG 165527312 Query 1912 CAGCGGAACCCCTTCCAAAATACTCATCCGCCCACTCTTGCATCTCGTCGGGAACGTTAG 1971 |||||| ||||| || ||| ||||| ||||||| || || || || |||| Sbjct 165527311 CAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTACATTAG 165527252 Query 1972 TGAAGGAGGATAGGGGAAACGGAGGAACCCACGG 2005 ||||| |||| || || ||| ||||| || Sbjct 165527251 TGAAGCTTGATAACGGGAATGGACTTACCCATGG 165527218 Score = 78.8 bits (86), Expect = 2e-11 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 1189 GTCCAGACTTGGAAGTTCAGGAATGCCTTGTGGAGATCCAA-TGCTTTCCTGAGGTTGTG 1247 |||| | || |||||||||| |||||||||| ||||||| ||||||| | ||||||| Sbjct 165517307 GTCCGTATTTTGAAGTTCAGGTATGCCTTGTGAAGATCCAGGTGCTTTCTT-AGGTTGTT 165517249 Query 1248 GTTGAACCGTATCTG 1262 ||||||||||||||| Sbjct 165517248 GTTGAACCGTATCTG 165517234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8454262742816