Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_020254.1 Length=2664 Score E Sequences producing significant alignments: (Bits) Value seq16 161 2e-36 seq13 149 1e-32 seq11 147 4e-32 >seq16 Length=188620566 Score = 161 bits (178), Expect = 2e-36 Identities = 338/496 (68%), Gaps = 22/496 (4%) Strand=Plus/Minus Query 1646 GGCTTGCCGTACTTGCAATTTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAG 1705 || || | ||||||||| |||| ||||| ||| |||| ||||||| |||||||||||| Sbjct 2249319 GGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAAGTAATTCCTTCCAG 2249260 Query 1706 TGCTTTAGCTTTAGATAATGGGGTGTGACATCATCGATGACGTTATACTCAGCATCGTCT 1765 | | |||| | | || || | || | ||| || |||||||| || |||||| Sbjct 2249259 T------GTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCACATCGTTA 2249206 Query 1766 GAGTAGACCCGGGAATTGAAATCCAGATGGCCACTTAAGTAATTATGTGGGCCTAATGCT 1825 ||| | ||| | ||| || || | || |||||||| ||||||||| || |||| | Sbjct 2249205 GAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTCCCAATGAT 2249146 Query 1826 CGAGCCCACATCGTCTTGCCCGTTCGAGAGTCACCCTCAACAATTA--AACTTATGGGCC 1883 | |||||||| ||||| || |||| || ||||| |||| |||| ||| | || | Sbjct 2249145 CTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACTGA--GGTC 2249088 Query 1884 TCTCTGGTCGCGCAGCGGCACCTCTC----CCAAAATAATCATCGGCCCACTCTTGCATC 1939 || ||| || | |||| || || |||||||||||| ||||| | |||||| Sbjct 2249087 TCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTGCCCATTTTTGCATA 2249032 Query 1940 TCGTCGGGAACGTTAGTGAAGGAGGAGAGGTGAAACGGAGGAGCCCACGGTTCCGGAGCC 1999 | | || ||||| ||||| || || | | | ||| |||| || || | || Sbjct 2249031 ACTTGTGGTACGTTCGTGAAAGAAGACACGGCGTATGGACTTACCCATGGAGCCTGTGCT 2248972 Query 2000 TTTTGAAAAATCCGAGAAGCATTTG-CCATCAAG-TTATGATGTTGAAGGAAGAAGTGCT 2057 |||||||| ||| | || ||| ||||||| || || | || || ||||| | Sbjct 2248971 GGTTGAAAAA-CCG-TATCCAGTTGTGCATCAAGCTTTTGGAAATTAAAGAGGAAGTATT 2248914 Query 2058 GTGGTTGCTCTTCTTTGATTATTTGCAATGCTTCTTCTGCTGAAGCGGCGTTCAATGCCT 2117 ||| |||||||| || || ||||| |||||| | | |||| ||| ||| | |||| Sbjct 2248913 TTGGCTGCTCTTCCTTCATGATTTGTAATGCTGACTGTTTTGAATCGGAGTTTATAGCCT 2248854 Query 2118 TGGCATATGTGTCGTT 2133 | | |||| ||||| Sbjct 2248853 TTGTGTATGACTCGTT 2248838 >seq13 Length=197258317 Score = 149 bits (164), Expect = 1e-32 Identities = 257/369 (70%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 1596 CTCCAGGATTGCAGAGCACGATTGATGGGATACCTCCTTTAATCTTTCTTGGCTTGCCGT 1655 |||| || ||||| || | ||||| ||| || |||||||| | ||||||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1656 ACTTGCAATTTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCT 1715 | ||||| || |||||||| | || |||||| ||||| || || ||||||||||| | Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA--- 89851315 Query 1716 TTAGATAATGGGGTGTGACATCATCGATGACGTTATACTCAGCATCGTCTGAGTAGAC-- 1773 || || || |||| | |||||||||| ||| || ||| | |||| |||| |||| Sbjct 89851316 --AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1774 CCGGGAATTGAAATCCAGATGGCCACTTAAGTAATTATGTGGGCCTAATGCTCGAGCCCA 1833 |||| |||| ||| |||| || ||| |||||| || || | || ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1834 CATCGTCTTGCCCGTTCGAGAGTCACCCTCAACAATTA--AACTTATGGGCCTCTCTGGT 1891 ||| || || || || | || |||| || | |||| ||| | || ||| || Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1892 CGCGCAGCGGCACCTCTCCCAAAATAATCATCGGCCCACTCTTGCATCTCGTCGGGAACG 1951 ||||||||||| | ||||| || ||| ||||| | ||||| || || || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1952 TTAGTGAAG 1960 ||||||||| Sbjct 89851551 TTAGTGAAG 89851559 >seq11 Length=168460249 Score = 147 bits (162), Expect = 4e-32 Identities = 257/371 (69%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 1592 CCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCTCCTTTAATCTTTCTTGGCTTG 1651 ||| |||| || ||||| |||| ||||| ||| || |||||||| | ||||||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1652 CCGTACTTGCAATTTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTT 1711 ||||| ||||| | |||||||| | | |||||| ||||| || || ||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1712 AGCTTTAGATAATGGGGTGTGACATCATCGATGACGTTATACTCAGCATCGTCTGAGTAG 1771 | || || || |||| | |||||||||| ||| || ||||| | || |||| || Sbjct 165527489 A-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1772 ACCCGGGAATTGAAATCCAGATGGCCACTTAAGTAATTATGTGGGCCTAATGCTCGAGCC 1831 || ||| |||| ||| |||| || ||| |||||| || || | || ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1832 CACATCGTCTTGCCCGTTCGAGAGTCACCCTCAACAAT--TAAACTTATGGGCCTCTCTG 1889 ||||| || |||| || | || | ||| | | || | ||| | || ||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1890 GTCGCGCAGCGGCACCTCTCCCAAAATAATCATCGGCCCACTCTTGCATCTCGTCGGGAA 1949 | ||||||||||| | ||||| || ||| ||||| ||||||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1950 CGTTAGTGAAG 1960 | ||||||||| Sbjct 165527257 CATTAGTGAAG 165527247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8415863366240