Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_020255.1 Length=2690 Score E Sequences producing significant alignments: (Bits) Value seq13 136 7e-29 seq11 125 1e-25 seq16 102 1e-18 >seq13 Length=197258317 Score = 136 bits (150), Expect = 7e-29 Identities = 264/387 (68%), Gaps = 12/387 (3%) Strand=Plus/Plus Query 1617 CTCCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCGT 1676 ||||||| ||||| || | ||||| ||| || |||||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1677 ATTTACAATTTGACTGCCAATCCTTTTGGGACCCAATGAGTTCTTTCCAGTGCTTTAGCT 1736 |||| || || |||||||||| | ||| | ||||| | |||||||||| ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1737 TTAGGTAGTGCGGGGGGACGTCATCGATGACGTTATATGCCACGTCATTTGAATAAAC-- 1794 | | ||| || || || | ||||||||||| ||| || | ||||| ||||| | || Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1795 CCTGGAATTAAAATCCAGGTGTCCACTTAAATAGTTATGGGCCCCCAACGCACGAGCCCA 1854 | || | |||| || |||| || |||||||| ||||| | | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1855 CATCGTCTTCCCCGTTCGACTATCACCCTCGATGATGAT--ACTAACAGGTCTCTCCGGC 1912 ||| || || || || | ||||| || ||||| || ||| |||||| |||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1913 CGCGCAGCGGCACCTCTCCCGAAATAAGCATCAGCCCAATCTTGAATCTCGTCCGGAACG 1972 ||||||||||| | || || || | ||| ||||| | ||| | || || || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1973 TTAGTGAATGAGGATAGTGGAAAAGGA 1999 |||||||| |||| ||| || ||| Sbjct 89851551 TTAGTGAAGCTTGATAATGGGAATGGA 89851577 Score = 93.3 bits (102), Expect = 7e-16 Identities = 230/344 (67%), Gaps = 9/344 (3%) Strand=Plus/Plus Query 1734 GCTTTAGGTAGTGCGGGGGGACGTCATCGATGACGTTATATGCCACGTCATTTGAATAAA 1793 |||| | ||| || || || | ||||||||||| ||| || | ||| ||||| | | Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1794 CCCTGGAATTAAAATCCAGGTGTCCACTTAAATAGTTATGGGCCCCCAACGCACGAGCCC 1853 | | || | |||| || |||| || |||||||| |||| | | |||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1854 ACATCGTCTTCCCCGTTCGACTATCACCCTCGATGATGATACTAAC--AGGTCTCTCCGG 1911 |||| || || || |||| || ||| || ||||| |||| || |||||| |||| Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGG 172134059 Query 1912 CCGCGCAGCGGCACCTCTCCCGAAATAAGCATCAGCCCAATCTTGAATCTCGTCCGGAAC 1971 ||| |||||||| | | || || || | ||| ||||| ||||| | || || | || Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 1972 GTTAGTGAATGAGGATAGTGGAAAAGGAGGAGTCCATGGCTCAGGAGCTTTTTTGAAAAT 2031 |||||||| |||| || || ||| |||||| | | || | ||| | | Sbjct 172134120 ATTAGTGAAGCTTGATAACGGGAATGGACATACCCATGGAGCTGTAGGTATTTCATAGAC 172134179 Query 2032 TCTATCAAGGTT--ACTTGATAGGTTGTGATATTGGAAGAGAAA 2073 |||||| ||||| | ||||| |||||||| || |||||||| Sbjct 172134180 TCTATCCAGGTTGAAGTTGAT--GTTGTGATGCTGTAAGAGAAA 172134221 >seq11 Length=168460249 Score = 125 bits (138), Expect = 1e-25 Identities = 309/465 (66%), Gaps = 14/465 (3%) Strand=Plus/Minus Query 1613 CCCTCTCCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTT 1672 ||| ||||||| ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1673 CCGTATTTACAATTTGACTGCCAATCCTTTTGGGACCCAATGAGTTCTTTCCAGTGCTTT 1732 |||||||| || | |||||||||| ||| | ||||| | |||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1733 AGCTTTAGGTAGTGCGGGGGGACGTCATCGATGACGTTATATGCCACGTCATTTGAATAA 1792 || | | ||| || || || | ||||||||||| ||| || | ||| ||||| | Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1793 ACCCTGGAATTAAAATCCAGGTGTCCACTTAAATAGTTATGGGCCCCCAACGCACGAGCC 1852 || | || |||| || |||| || |||||||| ||||| | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1853 CACATCGTCTTCCCCGTTCGACTATCACCCTCGATGATGAT--ACTAACAGGTCTCTCCG 1910 ||||| || || | || | || ||| | ||||| | ||| |||||| || Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1911 GCCGCGCAGCGGCACCTCTCCCGAAATAAGCATCAGCCCAATCTTGAATCTCGTCCGGAA 1970 ||||||||||||| | || || || | ||| ||||| ||||| | || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1971 CGTTAGTGAATGAGGATAGTGGAAAAGGAGGAGTCCATGGCTCAGGAGCTTTTTTGAAAA 2030 | |||||||| |||| || || ||| |||||| | | || ||| | | Sbjct 165527257 CATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTTCATAGA 165527198 Query 2031 TTCTATCAAGGT--TACTTGATAGGTTGTGATATTGGAAGAGAAA 2073 |||||| |||| || ||||| |||||||| || || ||||| Sbjct 165527197 CTCTATCCAGGTTGTAGTTGAT--GTTGTGATGCTGTAACAGAAA 165527155 >seq16 Length=188620566 Score = 102 bits (112), Expect = 1e-18 Identities = 228/340 (67%), Gaps = 18/340 (5%) Strand=Plus/Minus Query 1653 CTTTAATTTGAACTGGCTTTCCGTATTTACAATTTGACTGCCAATCCTTTTGGGACCCAA 1712 |||| || ||||| || |||| ||| || || |||| ||||| || |||| | |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1713 TGAGTTCTTTCCAGTGCTTTAGCTTTAGGTAGTGCGGGGGGACGTCATCGATGACGTTAT 1772 | ||| |||||||| |||| | || ||| |||| ||| || ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACAT------TGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1773 ATGCCACGTCATTTGAATAAACCCTGGAATTAAAATCCAGGTGTCCACTTAAATAGTTAT 1832 || |||| || || || ||||| | | ||| || || | | ||||||||||| |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1833 GGGCCCCCAACGCACGAGCCCACATCGTCTTCCCCGTTCGACTATCACCCTCGATGATGA 1892 | ||||| | | |||||||| ||||| || |||| |||||| || || || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1893 T--ACTAACAGGTCTCTCCGGCCGCGCAGCGGCACCTCTC----CCGAAATAAGCATCAG 1946 | ||| ||||||| || || | |||| || || |||||| |||| | Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTG 2249046 Query 1947 CCCAATCTTGAATCTCGTCCGGAACGTTAGTGAATGAGGA 1986 |||| | ||| || | | || ||||| ||||| || || Sbjct 2249045 CCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8499062015488