Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_020256.1 Length=2649 Score E Sequences producing significant alignments: (Bits) Value seq16 141 2e-30 seq13 138 2e-29 seq11 129 1e-26 >seq16 Length=188620566 Score = 141 bits (156), Expect = 2e-30 Identities = 337/501 (67%), Gaps = 30/501 (6%) Strand=Plus/Minus Query 1621 CTTTAATTTGAACAGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAA 1680 |||| || ||||| || |||| ||| ||||| |||| ||||||||| |||| ||||||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1681 TCAGTTCCTTCCAGTGCTTTAACTTTAGATAATGCGGGGTGACATCATCGATGACGTTGT 1740 | |||||||||||| ||||| | | || ||| | || | ||| || ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1741 ACTCAGCGTCGTCTGAGTAAATTCTTGGATTGAAGTCCAGGTGTCCACTCAGATAATTAT 1800 | || | |||| ||| ||| | ||||| ||||| | | ||||| | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1801 GTGGGCCTAACGCACGAGCCCACATTGTCTTCCCCGTTCGAGAGTCACCCTCTACAATTA 1860 || || || | | |||||||||||||| || |||| || ||||| || | |||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1861 --AACTTATGGGTCTTTCTGGCCGCGCAGCGGCACCTCTC----CCAAAATAATCGTCAG 1914 ||| | ||||| ||| || | |||| || || ||||||||| || | Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTG 2249046 Query 1915 CCCACTCCTGCATCTCGTCGGGAACGTTAGTGAAGGAGCAGA-GAAGTGACGGAGGAGCC 1973 |||| | ||||| | | || ||||| ||||| || | | | || | ||| || Sbjct 2249045 CCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACGGCGT-ATGGACTTACC 2248987 Query 1974 CATGGTTCCGGAGCCTTGG--AAAAAATCCTATCTAGGTTTGAATTAAGATTATGGAACT 2031 ||||| || | || ||| ||||| | |||| || | || || ||| || ||||| | Sbjct 2248986 CATGGAGCCTGTGC--TGGTTGAAAAACCGTATCCAGTTGTGCATCAAGCTTTTGGAAAT 2248929 Query 2032 GAAA---TAAGTATTTTTCAGGGATTTTTTCCTTTATTATTTGAAGAGCAGCTTCTTTTG 2088 ||| ||||||||| || | |||||| || ||||| | || | | ||||| Sbjct 2248928 TAAAGAGGAAGTATTTT---GGCTGCTCTTCCTTCATGATTTGTAATGCTGACTGTTTTG 2248872 Query 2089 TAGCTGCGTTTAATGCCTCTG 2109 | | | ||||| |||| || Sbjct 2248871 AATCGGAGTTTATAGCCTTTG 2248851 >seq13 Length=197258317 Score = 138 bits (152), Expect = 2e-29 Identities = 255/371 (69%), Gaps = 16/371 (4%) Strand=Plus/Plus Query 1585 CTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTTCCGT 1644 |||| || ||||| || | ||||| ||| || || ||||| | || ||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1645 ATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGTTCCTTCCAGTGCTTTAACT 1704 ||||||| || |||||||| | || |||||| ||||| | || ||||||||||| || Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA-- 89851316 Query 1705 TTAGATAATGCGGGGTGACATCATCGATGACGTTGTACTCAGCGTCGTCTGAGTAAA--- 1761 || || || | | |||||||||| |||||| ||| |||||| |||| | | Sbjct 89851317 ----GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1762 -TTCTTGGATTGAAGTCCAGGTGTCCACTCAGATAATTATGTGGGCCTAACGCACGAGCC 1820 ||||| |||| ||||| || |||| | || |||||| || || | | ||| Sbjct 89851373 TTTCTT--CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCC 89851430 Query 1821 CACATTGTCTTCCCCGTTCGAGAGTCACCCTCTACAATTA--AACTTATGGGTCTTTCTG 1878 |||||||| || || || | || |||| |||| |||| ||| | ||||| | Sbjct 89851431 CACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCG 89851488 Query 1879 GCCGCGCAGCGGCACCTCTCCCAAAATAATCGTCAGCCCACTCCTGCATCTCGTCGGGAA 1938 ||||||||||||| | ||||| || || ||||| | |||| || || || | Sbjct 89851489 GCCGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTA 89851548 Query 1939 CGTTAGTGAAG 1949 | ||||||||| Sbjct 89851549 CATTAGTGAAG 89851559 Score = 86.0 bits (94), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 1725 TCATCGATGACGTTGTACTCAGCGTCGTCTGAGTAAATTCTTGGATTGAAGTCCAGGTGT 1784 |||||||||| |||||| ||||||| || |||| | | | || |||| ||||| || Sbjct 172133906 TCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGAGGTCCAATTG- 172133964 Query 1785 CCACTCAGATAATTATGTGGGCCTAACGCACGAGCCCACATTGTCTTCCCCGTTCGAGAG 1844 |||| | || |||||| || | | | ||||||||||| || || |||| || Sbjct 172133965 CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCTGGAA 172134024 Query 1845 TCACCCTCTACAATTA--AACTTATGGGTCTTTCTGGCCGCGCAGCGGCACCTCTCCCAA 1902 | ||| |||| |||| ||| | ||||| | ||||| |||||||| | | |||| Sbjct 172134025 TTACCTTCTATGATTACTGACT--TTGGTCTCACCGGCCGTGCAGCGGCTTGTATACCAA 172134082 Query 1903 AATAATCGTCAGCCCACTCCTGCATCTCGTCGGGAACGTTAGTGAAG 1949 | || || ||||| || |||| || || | || ||||||||| Sbjct 172134083 AGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACATTAGTGAAG 172134129 >seq11 Length=168460249 Score = 129 bits (142), Expect = 1e-26 Identities = 252/371 (68%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 1581 CCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTT 1640 ||| |||| || ||||| |||| ||||| ||| || || ||||| | || ||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1641 CCGTATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGTTCCTTCCAGTGCTTT 1700 ||||||||||| | |||||||| | | |||||| ||||| | || ||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1701 AACTTTAGATAATGCGGGGTGACATCATCGATGACGTTGTACTCAGCGTCGTCTGAGTAA 1760 || || || || | | |||||||||| |||||| ||||||| || |||| | Sbjct 165527489 AA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1761 ATTCTTGGATTGAAGTCCAGGTGTCCACTCAGATAATTATGTGGGCCTAACGCACGAGCC 1820 | | || ||| ||||| || |||| | || |||||| || || | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1821 CACATTGTCTTCCCCGTTCGAGAGTCACCCTCTACAAT--TAAACTTATGGGTCTTTCTG 1878 |||||||| || | || | || | ||| | || || | ||| | ||||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1879 GCCGCGCAGCGGCACCTCTCCCAAAATAATCGTCAGCCCACTCCTGCATCTCGTCGGGAA 1938 ||||||||||||| | ||||| || || ||||| || |||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1939 CGTTAGTGAAG 1949 | ||||||||| Sbjct 165527257 CATTAGTGAAG 165527247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8367864145520