Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_020257.1 Length=2685 Score E Sequences producing significant alignments: (Bits) Value seq11 82.4 1e-12 seq13 80.6 5e-12 >seq11 Length=168460249 Score = 82.4 bits (90), Expect = 1e-12 Identities = 242/370 (65%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1618 CCCTCTCCAGAATTGCAAAGCACGATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTA 1677 ||| |||| | ||||| |||| ||||| |||||| |||||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1678 CCGTACTTGCAATTGCTTTGCCAGTCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTT 1737 ||||| ||||| | ||||| | | || || ||||| || |||||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1738 AGCTTTAGATAGTGCGGGGCGACGTCATCAATGACGTTATACTCCGCCTCGTTCGAGTAA 1797 | || || || || | | |||||| |||| ||| || || || | ||| ||| | Sbjct 165527489 A-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1798 ACCCTAGAATTGAAATCTAGGTGTCCGCTCAAGTAATTGTGTGAACCTAAAGCACGGGCC 1857 || | ||| || | || || | | ||| || ||| || |||| | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1858 CACATCGTCTTCCCTGTACGACTATCGCCCTCGACGATGAT--ACTAATAGGTCGCTCAG 1915 ||||| || || | ||| | || || | | ||| | ||| | |||| | | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1916 GCCGCGCAGCGGAACCTCTCCCGAAATATTCGTCCGCCCATTCTTGCATATCGTCAGGAA 1975 |||||||||||| | || || ||| || ||||||||||||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1976 CGTTATTGAA 1985 | ||| |||| Sbjct 165527257 CATTAGTGAA 165527248 >seq13 Length=197258317 Score = 80.6 bits (88), Expect = 5e-12 Identities = 241/368 (65%), Gaps = 12/368 (3%) Strand=Plus/Plus Query 1622 CTCCAGAATTGCAAAGCACGATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGT 1681 |||| | ||||| || | ||||| |||||| |||||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1682 ACTTGCAATTGCTTTGCCAGTCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCT 1741 | ||||| || ||||| | || || ||||| || |||||||||||||| | Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA--- 89851315 Query 1742 TTAGATAGTGCGGGGCGACGTCATCAATGACGTTATACTCCGCCTCGTTCGAGTAAAC-- 1799 || || || || | | |||||| |||| ||| || || | ||||| ||| | || Sbjct 89851316 --AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1800 CCTAGAATTGAAATCTAGGTGTCCGCTCAAGTAATTGTGTGAACCTAAAGCACGGGCCCA 1859 | |||| || | || || | | ||| || ||| || |||| | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1860 CATCGTCTTCCCTGTACGACTATCGCCCTCGACGATGAT--ACTAATAGGTCGCTCAGGC 1917 ||| || || ||||| | ||| | || | ||| || ||| | |||| | ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1918 CGCGCAGCGGAACCTCTCCCGAAATATTCGTCCGCCCATTCTTGCATATCGTCAGGAACG 1977 |||||||||| | || || ||| || ||||||| ||||| || || || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1978 TTATTGAA 1985 ||| |||| Sbjct 89851551 TTAGTGAA 89851558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8483062275248