Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_020473.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq16 118 2e-23 seq13 107 3e-20 seq11 89.7 9e-15 >seq16 Length=188620566 Score = 118 bits (130), Expect = 2e-23 Identities = 186/265 (70%), Gaps = 10/265 (4%) Strand=Plus/Minus Query 1705 CTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCA 1764 |||| || ||||| || |||| |||||| |||| ||||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1765 TGAATTC------GTGCTTTAGATATTGCGGATCGACGTCATCGATGACGTTGTACCACG 1818 ||||| ||| |||| | |||| || | |||| ||| || ||||| || | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1819 CTTCATTACTGTACACTTTTGGACTTAAGTCCAAATGGCCACAAAGATAATTATGTGGAC 1878 | || ||| | | || | ||| | ||||| |||| |||| | |||||||||| | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1879 CCAAAGACCTGGCCCACATTGTCTTCCCCGTACGACTATCACCCTCGATCACTAT--ACT 1936 |||| || || |||||||||||||| || || | |||||| || || | ||| ||| Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1937 CACCGGTCTCAAGGGCCGCGCAGCG 1961 | |||||||| || || | |||| Sbjct 2249093 GA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 107 bits (118), Expect = 3e-20 Identities = 212/307 (69%), Gaps = 14/307 (5%) Strand=Plus/Plus Query 1671 CCTGGATTGCAGAGGAAGATTGTTGGGATACCGCCTTTAATTTGAACTGGCTTTCCGTAC 1730 ||||| ||||| || | ||||||||| || || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA- 89851259 Query 1731 TTTGTATTT-GATTGCCAGTCTCTTTGGGCCCCCATGAATTC------GTGCTTTAGATA 1783 |||| | || || ||||| | | ||| || || || || || |||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1784 TTGCGGATCGACGTCATCGATGACGTTGTA--CCACGCTTCATTACTGTACACTTTTGGA 1841 ||| || | ||||||||||| |||||| | ||| || || | | |||||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCT 89851377 Query 1842 -CTTAAG-TCCAAATGGCCACAAAGATAATTATGTGGACCCAAAGACCTGGCCCACATTG 1899 ||| || |||| ||| ||||| | || |||||| |||||||| || |||||||||| Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1900 TCTTCCCCGTACGACTATCACCCTCGATCACTATACTCACCGGTCTCAAGGGCCGCGCAG 1959 | || || || | ||||| || || | ||| | ||||||| |||||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAG 89851497 Query 1960 CGGCATG 1966 |||| || Sbjct 89851498 CGGCTTG 89851504 >seq11 Length=168460249 Score = 89.7 bits (98), Expect = 9e-15 Identities = 203/303 (67%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 1671 CCTGGATTGCAGAGGAAGATTGTTGGGATACCGCCTTTAATTTGAACTGGCTTTCCGTAC 1730 ||||| ||||| || | ||||||||| || || ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA- 165527545 Query 1731 TTTGTATTT-GATTGCCAGTCTCTTTGGGCCCCCATGAATTC------GTGCTTTAGATA 1783 |||| | | || ||||| | || ||| || || || || || |||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1784 TTGCGGATCGACGTCATCGATGACGTTGTACCACGCTTCATTACTGTACACTTTTGGACT 1843 ||| || | ||||||||||| |||||| || | || | | |||||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1844 TAAGTCCAAATGGCCACAAAGATAATTATGTGGACCCAAAGACCTGGCCCACATTGTCTT 1903 ||||| ||| ||||| | || |||||| |||||||| || ||||||||||| || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1904 CCCCGTACGACTATCACCCTCGATCACTATACTCACCGGTCTCAAGGGCCGCGCAGCGGC 1963 | || | || ||| | || | | | | ||||||| |||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 Query 1964 ATG 1966 || Sbjct 165527304 TTG 165527302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8668659262032