Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_021202.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq16 113 8e-22 seq13 105 1e-19 seq11 91.5 3e-15 >seq16 Length=188620566 Score = 113 bits (124), Expect = 8e-22 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 1720 CTTTAATTTGAATTGGTTTCCCGTACTT--AGTGTTGCTTTGCCAGTCCCTTTGGGCCCC 1777 |||| || |||| ||||| | |||||| | | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACT-TTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1778 CATGAATTCTTTAAAGTGCTTTAGATAATGGGGGTCTACGTCATCAATGACGTTATA--C 1835 | ||||| || |||| |||| | | || |||| |||| |||||| |||||||| | Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1836 CAAGCATCATTACTGTATACCTTTGGGCTTAGATCAAGATGTCCACACAAATAATTGTGT 1895 || |||| ||| | | ||| | || | | || | || |||| |||||||| ||| Sbjct 2249215 CA--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGT 2249158 Query 1896 GGTCCCAGTGATCTGGCCCACATTGTTTTACCTGTACGACTATCACCTTCTAT 1948 ||||| |||||| ||||||||||| || || || | ||||||||| || Sbjct 2249157 CTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAAT 2249105 >seq13 Length=197258317 Score = 105 bits (116), Expect = 1e-19 Identities = 208/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1686 CCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTAC 1745 ||||| ||||| || | ||| ||||| || || ||||| | || |||| || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1746 TTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAA 1805 || ||| ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1806 TGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACCTTTGGG-CT 1864 || || || |||||| |||| ||| || | | || || | | || ||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1865 T-AGATCAAGATGTCCACACAAATAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTT 1923 | || || | ||| ||||| | || || ||| ||||| ||||| ||||||||||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1924 TACCTGTACGACTATCACCTTCTATCACAAT--ACTTTTGGGTCTCCAAGGCCGCGCAGC 1981 ||||||| | ||||| |||||| | || ||||| |||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 1982 GGC 1984 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 91.5 bits (100), Expect = 3e-15 Identities = 202/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1686 CCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTAC 1745 ||||| ||||| || | ||| ||||| || || ||||| | || |||| || ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1746 TTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAA 1805 || || ||||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1806 TGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACCTTTGGGCTT 1865 || || || |||||| |||| ||| || ||| | || | | || ||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1866 AGATCAAGATGTCCACACAAATAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTA 1925 | || | ||| ||||| | || || ||| ||||| ||||| |||||||||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1926 CCTGTACGACTATCACCTTCTATCACAAT--ACTTTTGGGTCTCCAAGGCCGCGCAGCGG 1983 | ||| | || ||||| ||| | | ||||| |||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1984 C 1984 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8655859469840