Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_021205.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq16 138 2e-29 >seq16 Length=188620566 Score = 138 bits (152), Expect = 2e-29 Identities = 189/260 (73%), Gaps = 8/260 (3%) Strand=Plus/Minus Query 1717 CTTTAATTTGAACCGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCA 1776 |||| || |||||||| |||| ||||||| |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1777 TGAATTCTTTAAAATGTTTTAGATAGTGCGGATCGACGTCATCAATGACGTTGTA--CCA 1834 ||||| || | ||||||| | | || || | |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1835 GGCATCATTATTGTATACCTTTGGACTTAAATCAAGATGACCACACAAATAATTATGGGG 1894 |||| ||| | | ||| | ||| | || || | || ||||| ||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1895 TCCTAATGACCTGGCCCACATTGTCTTCCCCGTCCGGCTATCTCCTTCGATAACTAT--A 1952 ||| ||||| || |||||||||||||| || || | ||| ||||| || | ||| | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1953 CTTATCGGTCTTAATGGCCG 1972 || | ||||| ||||| || Sbjct 2249095 CTGA--GGTCTCAATGGGCG 2249078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8671859210080