Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_021245.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq13 104 4e-19 seq16 100 5e-18 seq11 93.3 7e-16 >seq13 Length=197258317 Score = 104 bits (114), Expect = 4e-19 Identities = 207/304 (68%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1686 TCCTGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAATTTGAATTGGTTTCCCGTA 1745 |||||| ||||| || | ||||||||| || || ||||| | || |||| || |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1746 CTTTGTGTTGCTTTGCCAGTCCCTCTGTGCCCCCATGAACTCTTTAAAGTGCTTTAGGAA 1805 || ||| ||||| | || || || || |||||||| ||||||| | | | Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1806 GTGGGGGTCTACGTCATCAATGACGTTGTACCAGGCATCATTACTGTATACTTTTGGAC- 1864 || || || |||||| |||| |||||| | || || | | |||||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1865 -TGAGGTCAAGATGACCACACAAATAATTATGTGGGCCTAACGATCTAGCCCACATTGTC 1923 ||||||| | ||||||||| | || |||||| || || ||||| ||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1924 TTCCCTGTACGACTATCACCCTCTACTACAAT--ACTTACAGGCCTCCACGGCCGCGCAG 1981 || ||||| | ||||| |||| | || |||| || ||| ||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCGCGCAG 89851497 Query 1982 CGGC 1985 |||| Sbjct 89851498 CGGC 89851501 >seq16 Length=188620566 Score = 100 bits (110), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 1721 CTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGTGCCCCCA 1780 |||| || |||| ||||| | |||||| || ||||||||| || ||||| || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1781 TGAACTCTTTAAAGTGCTTTAGGAAGTGGGGGTCTACGTCATCAATGACGTTGTA--CCA 1838 || || || |||| |||| | || |||| |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1839 GGCATCATTACTGTATACTTTTGGACTGAGGTCAAGATGACCACACAAATAATTATGTGG 1898 |||| ||| | | || | ||| | | ||| | || ||||| |||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1899 GCCTAACGATCTAGCCCACATTGTCTTCCCTGT 1931 || || ||||| |||||||||||||| || || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGT 2249123 >seq11 Length=168460249 Score = 93.3 bits (102), Expect = 7e-16 Identities = 203/302 (67%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1686 TCCTGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAATTTGAATTGGTTTCCCGTA 1745 |||||| ||||| || | ||||||||| || || ||||| | || |||| || ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1746 CTTTGTGTTGCTTTGCCAGTCCCTCTGTGCCCCCATGAACTCTTTAAAGTGCTTTAGGAA 1805 || || ||||| | | || || || || |||||||| ||||| | | | | Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1806 GTGGGGGTCTACGTCATCAATGACGTTGTACCAGGCATCATTACTGTATACTTTTGGACT 1865 || || || |||||| |||| |||||| || | || | | |||||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1866 GAGGTCAAGATGACCACACAAATAATTATGTGGGCCTAACGATCTAGCCCACATTGTCTT 1925 | |||| | ||||||||| | || |||||| || || ||||| ||||||||||| || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1926 CCCTGTACGACTATCACCCTCTACTACAAT--ACTTACAGGCCTCCACGGCCGCGCAGCG 1983 | ||| | || ||| | || | | |||| || ||| ||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCATCGGCCGCGCAGCG 165527307 Query 1984 GC 1985 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8665459313984