Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_021341.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq13 87.8 3e-14 seq16 86.0 1e-13 >seq13 Length=197258317 Score = 87.8 bits (96), Expect = 3e-14 Identities = 207/306 (68%), Gaps = 10/306 (3%) Strand=Plus/Plus Query 1687 TCCAGGATTGCATAGGAAGATTGTCGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTA 1746 ||| || |||||||| | |||||| || || |||||||| | || |||| || |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1747 CTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGCTTTAGGTA 1806 || ||| ||||| | ||| || || || || ||||| ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1807 GTGGGGATCTACGTCATCAACCACGTTGTA--CCACGCATCATTGCTGTATACTTTAGGG 1864 || || || |||||| | | |||||| | ||| || || | | ||||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCT 89851377 Query 1865 -CTT-AGATCAAGGTGCCCACATAAATAATTATGTGGACCCAGTGACCGTGCCCACATAG 1922 ||| || || | || ||||||| || |||||| |||| || | ||||||||| | Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1923 TCTTCCCTGTACGACTCTCACCCTCTATGACTAT--ACTTATGGGTCTCCATGGCCGCGC 1980 | || ||||| | |||| ||||||| ||| |||| |||||| |||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGC 89851495 Query 1981 AGCGGC 1986 |||||| Sbjct 89851496 AGCGGC 89851501 Score = 77.0 bits (84), Expect = 6e-11 Identities = 151/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 2253 TCTGAAACTCTCCCCATTCGATGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCGG 2312 |||||||| |||||| ||||| |||| ||||| || | || ||| ||||| | Sbjct 89851771 TCTGAAACGTTCCCCAGTCGATTATGTCACCGTCTTTTTGCATATATCTTCTGACGAAGA 89851830 Query 2313 AGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGG-GATACC 2371 | ||||||||||| |||||| || ||||| || | | ||| | ||||| ||| Sbjct 89851831 AACTGGATTTAGCAGACTGTATATTTGGATGACAAACTTCAGACATATTTGGGTGAT-TG 89851889 Query 2372 AAATCGAAGAATCTGTTATTTTGGCACTT--GTATTTTCCTTCGAATTGGATAAGCACGT 2429 | || |||||||| |||||| || || | |||| ||| | || || | || | Sbjct 89851890 ATGTCAAAGAATCTTGGATTTTGACATTTCAATTTTTTTTTTCAATCTGCATCAAAACAT 89851949 Query 2430 GGAGATGAGGAGACCCATCTTCGTGAAGCTCTCTGCAGAT 2469 | |||||||| | |||||||| | ||||||||||| Sbjct 89851950 GTAGATGAGGTTTACTGTCTTCGTGCAATTCTCTGCAGAT 89851989 >seq16 Length=188620566 Score = 86.0 bits (94), Expect = 1e-13 Identities = 179/265 (68%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1722 CTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1781 |||| || |||| ||||| | |||||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1782 TGAATTCTTTGAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAACCACGTTGTACCACG 1841 ||||| || |||| |||| | || || | |||| ||||| ||||| || | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1842 CATCATTGCTGTATACTTTAGGGCTTAGATCAAGGTGCCCACATAAATAATTATGTGGAC 1901 |||| || | | || |||| | | || | | |||| ||||||||||||| | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1902 CCAGTGACCGTGCCCACATAGTCTTCCCTGTACGACTCTCACCCTCTATGACTAT--ACT 1959 ||| ||| | ||||||||| ||||| || || | ||||| || || | ||| ||| Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1960 TATGGGTCTCCATGGCCGCGCAGCG 1984 | |||||| |||| || | |||| Sbjct 2249093 GA--GGTCTCAATGGGCGTGAAGCG 2249071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8703858690560