Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_021579.1 Length=2669 Score E Sequences producing significant alignments: (Bits) Value seq16 168 1e-38 seq13 118 2e-23 seq11 114 2e-22 >seq16 Length=188620566 Score = 168 bits (186), Expect = 1e-38 Identities = 250/351 (71%), Gaps = 25/351 (7%) Strand=Plus/Minus Query 1620 CTTTAATTTGAACCGGCTTTCCGTATTTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAA 1679 |||| || |||||||| |||| ||| ||||| |||| ||||||||| ||||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1680 TCAATTCTTTCCAGTGCTTCATCTTTAGGTAGTGCGGTGCGACGTCATCAATGACGTTAT 1739 ||||| |||||||| || | | | ||| | | |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1740 AATCCACATCATTTGAATAAACCCTAGAATTGAAATCCAGGTGTCCACTCAAATAATTGT 1799 | |||||||| || || ||||| ||| ||| || || | | ||||| |||||||| | Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1800 GAGATCCCAAAGCACGTGCCCACATCGTCTTGCCGGTTCTTGAATCACCCTCCACGATGA 1859 | |||||| | | ||||||||| ||||| ||||||||||||||||| || | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1860 TGGACACTGGCCTGAGACTATTATGAAAATGTGGCCGCGCAGCG--GAAAGACGACCAAA 1917 | || ||||| | | || ||| || | |||| | || || ||| Sbjct 2249099 TTGA-------CTGAG----GTCTCAA----TGGGCGTGAAGCGCTGTCGGATGA--AAA 2249057 Query 1918 ATAATCATCCGCCCACTCTTGCATCTCATCCGGAACGTTAGTGAAAGAGGA 1968 ||||||||| ||||| | |||||| | | || ||||| |||||||| || Sbjct 2249056 ATAATCATCTGCCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 118 bits (130), Expect = 2e-23 Identities = 252/379 (66%), Gaps = 23/379 (6%) Strand=Plus/Plus Query 1586 CCTGGATTGCAAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCGTAT 1645 ||||| ||||| || | ||||| |||||||| ||||| | || ||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1646 TTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTCATCTTT 1705 ||||| || || ||||| | ||| || ||||| || ||||||||||| ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTG------CTTG 89851314 Query 1706 AGGTAGTGCGGTGCGACGTCATCAATGACGTTATAATCCACATCATTTGAATAAAC--CC 1763 | ||| || |||| | |||||| |||| ||| ||||| || || ||||| | || Sbjct 89851315 AAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1764 TAGAATTGAAATCCAGGTGTCCACTCAAATAATTGTGAGATCCCAAAGCACGTGCCCACA 1823 | |||| |||| || |||| | || || || |||||||| | |||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1824 TCGTCTTGCCGGTTCTTGAATCACCCTCCACGATGATGGACACTGGCCTGAGACTATTAT 1883 | || || || || || ||||||| || | ||| || ||| ||| || | Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCA--------- 89851485 Query 1884 GAAAATGTGGCCGCGCAGCGGAAAGACGACCAAAATAATCATCCGCCCACTCTTGCATCT 1943 ||||||||||||| | | ||||| || ||| ||||| | ||||| | Sbjct 89851486 ------TCGGCCGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGT 89851539 Query 1944 CATCCGGAACGTTAGTGAA 1962 | || || || |||||||| Sbjct 89851540 CTTCTGGTACATTAGTGAA 89851558 >seq11 Length=168460249 Score = 114 bits (126), Expect = 2e-22 Identities = 253/383 (66%), Gaps = 21/383 (5%) Strand=Plus/Minus Query 1580 CCCTCGCCTGGATTGCAAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTT 1639 ||| | ||||| ||||| |||| ||||| |||||||| ||||| | || ||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1640 CCGTATTTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTC 1699 ||||||||||| | || ||||| | | ||| || ||||| || ||||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG---- 165527494 Query 1700 ATCTTTAGGTAGTGCGGTGCGACGTCATCAATGACGTTATAATCCACATCATTTGAATAA 1759 | | | ||| || |||| | |||||| |||| ||| || || | | ||||| | Sbjct 165527493 --CATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1760 ACCCTAGAATTGAAATCCAGGTGTCCACTCAAATAATTGTGAGATCCCAAAGCACGTGCC 1819 || | ||| |||| || |||| | || || || |||||||| | |||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1820 CACATCGTCTTGCCGGTTCTTGAATCACCCTCCACGATGATGGACACTGGCCTGAGACTA 1879 ||||| || |||| || || |||| ||| | | ||| | ||| ||| || | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCA----- 165527321 Query 1880 TTATGAAAATGTGGCCGCGCAGCGGAAAGACGACCAAAATAATCATCCGCCCACTCTTGC 1939 ||||||||||||| | ||||||| || ||| ||||| |||||| Sbjct 165527320 ----------TCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGC 165527271 Query 1940 ATCTCATCCGGAACGTTAGTGAA 1962 | || || || || |||||||| Sbjct 165527270 AGGTCTTCTGGTACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8431863106480