Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_021579.1
Length=2669
Score E
Sequences producing significant alignments: (Bits) Value
seq16 168 1e-38
seq13 118 2e-23
seq11 114 2e-22
>seq16
Length=188620566
Score = 168 bits (186), Expect = 1e-38
Identities = 250/351 (71%), Gaps = 25/351 (7%)
Strand=Plus/Minus
Query 1620 CTTTAATTTGAACCGGCTTTCCGTATTTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAA 1679
|||| || |||||||| |||| ||| ||||| |||| ||||||||| ||||| || ||||
Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274
Query 1680 TCAATTCTTTCCAGTGCTTCATCTTTAGGTAGTGCGGTGCGACGTCATCAATGACGTTAT 1739
||||| |||||||| || | | | ||| | | |||| |||||| |||||||
Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220
Query 1740 AATCCACATCATTTGAATAAACCCTAGAATTGAAATCCAGGTGTCCACTCAAATAATTGT 1799
| |||||||| || || ||||| ||| ||| || || | | ||||| |||||||| |
Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160
Query 1800 GAGATCCCAAAGCACGTGCCCACATCGTCTTGCCGGTTCTTGAATCACCCTCCACGATGA 1859
| |||||| | | ||||||||| ||||| ||||||||||||||||| || | || |
Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100
Query 1860 TGGACACTGGCCTGAGACTATTATGAAAATGTGGCCGCGCAGCG--GAAAGACGACCAAA 1917
| || ||||| | | || ||| || | |||| | || || |||
Sbjct 2249099 TTGA-------CTGAG----GTCTCAA----TGGGCGTGAAGCGCTGTCGGATGA--AAA 2249057
Query 1918 ATAATCATCCGCCCACTCTTGCATCTCATCCGGAACGTTAGTGAAAGAGGA 1968
||||||||| ||||| | |||||| | | || ||||| |||||||| ||
Sbjct 2249056 ATAATCATCTGCCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006
>seq13
Length=197258317
Score = 118 bits (130), Expect = 2e-23
Identities = 252/379 (66%), Gaps = 23/379 (6%)
Strand=Plus/Plus
Query 1586 CCTGGATTGCAAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCGTAT 1645
||||| ||||| || | ||||| |||||||| ||||| | || ||||| |||||
Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260
Query 1646 TTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTCATCTTT 1705
||||| || || ||||| | ||| || ||||| || ||||||||||| |||
Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTG------CTTG 89851314
Query 1706 AGGTAGTGCGGTGCGACGTCATCAATGACGTTATAATCCACATCATTTGAATAAAC--CC 1763
| ||| || |||| | |||||| |||| ||| ||||| || || ||||| | ||
Sbjct 89851315 AAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374
Query 1764 TAGAATTGAAATCCAGGTGTCCACTCAAATAATTGTGAGATCCCAAAGCACGTGCCCACA 1823
| |||| |||| || |||| | || || || |||||||| | ||||||||
Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434
Query 1824 TCGTCTTGCCGGTTCTTGAATCACCCTCCACGATGATGGACACTGGCCTGAGACTATTAT 1883
| || || || || || ||||||| || | ||| || ||| ||| || |
Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCA--------- 89851485
Query 1884 GAAAATGTGGCCGCGCAGCGGAAAGACGACCAAAATAATCATCCGCCCACTCTTGCATCT 1943
||||||||||||| | | ||||| || ||| ||||| | ||||| |
Sbjct 89851486 ------TCGGCCGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGT 89851539
Query 1944 CATCCGGAACGTTAGTGAA 1962
| || || || ||||||||
Sbjct 89851540 CTTCTGGTACATTAGTGAA 89851558
>seq11
Length=168460249
Score = 114 bits (126), Expect = 2e-22
Identities = 253/383 (66%), Gaps = 21/383 (5%)
Strand=Plus/Minus
Query 1580 CCCTCGCCTGGATTGCAAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTT 1639
||| | ||||| ||||| |||| ||||| |||||||| ||||| | || |||||
Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550
Query 1640 CCGTATTTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTC 1699
||||||||||| | || ||||| | | ||| || ||||| || |||||||||||
Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG---- 165527494
Query 1700 ATCTTTAGGTAGTGCGGTGCGACGTCATCAATGACGTTATAATCCACATCATTTGAATAA 1759
| | | ||| || |||| | |||||| |||| ||| || || | | ||||| |
Sbjct 165527493 --CATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436
Query 1760 ACCCTAGAATTGAAATCCAGGTGTCCACTCAAATAATTGTGAGATCCCAAAGCACGTGCC 1819
|| | ||| |||| || |||| | || || || |||||||| | ||||
Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376
Query 1820 CACATCGTCTTGCCGGTTCTTGAATCACCCTCCACGATGATGGACACTGGCCTGAGACTA 1879
||||| || |||| || || |||| ||| | | ||| | ||| ||| || |
Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCA----- 165527321
Query 1880 TTATGAAAATGTGGCCGCGCAGCGGAAAGACGACCAAAATAATCATCCGCCCACTCTTGC 1939
||||||||||||| | ||||||| || ||| ||||| ||||||
Sbjct 165527320 ----------TCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGC 165527271
Query 1940 ATCTCATCCGGAACGTTAGTGAA 1962
| || || || || ||||||||
Sbjct 165527270 AGGTCTTCTGGTACATTAGTGAA 165527248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8431863106480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |