Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_021719.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq13 105 1e-19 seq11 98.7 2e-17 >seq13 Length=197258317 Score = 105 bits (116), Expect = 1e-19 Identities = 210/305 (69%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 1700 CTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGT 1759 ||||||| ||||| || | ||| || || || || ||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1760 ATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGT 1819 |||| ||||| || ||||| | | || || || || || || || ||||||| | || Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1820 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACTTTTGGA- 1878 |||| || | |||||| |||| ||| || | | ||| | | |||||| Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1879 CTTAAG-TCTAAATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGCCCAGACTGT 1937 ||| || || | ||||||||| | || |||||| ||| |||||||| ||||| | ||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1938 TTTACCTATTCTACTTGGGCCTTCTATTACAAT--ACTAATGGGCCTATCTGGCCGCGCA 1995 ||||||| | || | |||||| | || ||| ||| | ||| ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT-TGGTCTCATC-GGCCGCGCA 89851496 Query 1996 GCGGC 2000 ||||| Sbjct 89851497 GCGGC 89851501 >seq11 Length=168460249 Score = 98.7 bits (108), Expect = 2e-17 Identities = 213/311 (68%), Gaps = 12/311 (4%) Strand=Plus/Minus Query 1696 CCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTT 1755 ||| ||||||| ||||| || | ||| || || || || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1756 CCGTATTTACAGTTGGATTGCCAGTCCTTC--TGGGCCCCCATGAATTCCTTAAAGTGCT 1813 |||||||| |||| || ||||| | ||| || || || || || || || ||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTTCCAGTGCA 165527492 Query 1814 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACTT 1873 | | |||||| || | |||||| |||| ||| || ||| |||| | | |||| Sbjct 165527491 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTT 165527432 Query 1874 TTGGACTTAAGTCTAAATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGCCCAGA 1933 || | ||| | ||||||||| | || |||||| ||| |||||||| ||||| | Sbjct 165527431 TTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACA 165527372 Query 1934 CTGTTTTACCTATTCT--ACTTGGGCCTTCTATTACAAT--ACTAATGGGCCTATCTGGC 1989 |||||| | | | || | || |||| ||| | | ||| ||| | ||| ||| Sbjct 165527371 TTGTTTTGCTTGTCCTGGAATTA--CCTTTTATGATTGTTGACTT-TGGTCTCATC-GGC 165527316 Query 1990 CGCGCAGCGGC 2000 ||||||||||| Sbjct 165527315 CGCGCAGCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8739053946120