Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_022005.1 Length=2597 Score E Sequences producing significant alignments: (Bits) Value seq16 167 4e-38 seq13 156 7e-35 seq11 138 2e-29 seq9 87.8 3e-14 seq8 78.8 2e-11 >seq16 Length=188620566 Score = 167 bits (184), Expect = 4e-38 Identities = 237/329 (72%), Gaps = 16/329 (5%) Strand=Plus/Minus Query 1583 AACTGGCTTGCCGTACTTGCAATTTGACTGCCATTTCTTTTGGGCCCAAAAAAGTTCTTT 1642 ||| || || | ||||||||| |||| ||||| | |||| || | || | ||| || Sbjct 2249323 AACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAAGTAATTCCTT 2249264 Query 1643 CCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTC 1702 |||||| |||| | || ||| | | || | |||||| |||||||| ||||| || Sbjct 2249263 CCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTATATTCCACATC 2249210 Query 1703 GTCCGAGTACACTCTGGAATTGAAGTCTAGGTGTCCACTAAGATAATTATGTGGGCCTAA 1762 || ||| | || | | ||| ||||||| | ||||| | |||||||||| || || Sbjct 2249209 GTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTCCCAA 2249150 Query 1763 TGATCGAGCCCACATCGTCTTTCCTGTTCTTGAATCACCTTCGACTATGA--GACTTAAT 1820 ||||| |||||||| |||||||| ||||||||||||||||| | ||| | |||| | Sbjct 2249149 TGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACTGA-- 2249092 Query 1821 GGTCTTTCTGGCCGCGCAGCGGGACTCT---TTCCAAAATAATCATCTGCCCATTCTTGC 1877 ||||| ||| || | |||| || | | |||||||||||||||||||| |||| Sbjct 2249091 GGTCTCAATGGGCGTGAAGCG---CTGTCGGATGAAAAATAATCATCTGCCCATTTTTGC 2249035 Query 1878 ATCTCGTCGGGAACGTTAGTGAAAGAGGA 1906 || | | || ||||| |||||||| || Sbjct 2249034 ATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 156 bits (172), Expect = 7e-35 Identities = 259/368 (70%), Gaps = 16/368 (4%) Strand=Plus/Plus Query 1539 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATGACAACTGGCTTGCCGTAC 1598 || || ||||| || | ||||| ||| || |||||||| | | | ||||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1599 TTGCAATTTGACTGCCATTTCTTTTGGGCCCAAAAAAGTTCTTTCCAGTGCTTTAGCTTT 1658 ||||| || |||||||| || | ||| || | || || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1659 AGATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCGTCCGAGTACAC--TC 1716 || || || |||| | ||||| |||| ||| || || || |||| ||| | || | Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1717 TGGAATTGAAGTCTAGGTGTCCACTAAGATAATTATGTGGGCCTAATGATCGAGCCCACA 1776 | |||| ||| | || |||| | || |||||| || || |||| ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1777 TCGTCTTTCCTGTTCTTGAATCACCTTCGACTATGA--GACTTAATGGTCTTTCTGGCCG 1834 | || || ||||| || ||||||| ||| | || | ||||| |||||| ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCG 89851492 Query 1835 CGCAGCGGGACTCTT--TCCAAAATAATCATCTGCCCATTCTTGCATCTCGTCGGGAACG 1892 |||||||| || | |||||| || ||||||||||| ||||| || || || || Sbjct 89851493 CGCAGCGG--CTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1893 TTAGTGAA 1900 |||||||| Sbjct 89851551 TTAGTGAA 89851558 Score = 84.2 bits (92), Expect = 4e-13 Identities = 170/249 (68%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 1654 GCTTTAGATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCGTCCGAGTACA 1713 |||| | || || |||| | ||||| |||| ||| || || | | || ||| | | Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1714 CTCTGGAATTGAAGTCTAGGTGTCCACTAAGATAATTATGTGGGCCTAATGATCGAGCCC 1773 || | |||| ||| | || |||| | || |||||| || | |||| |||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1774 ACATCGTCTTTCCTGTTCTTGAATCACCTTCGACTATGA--GACTTAATGGTCTTTCTGG 1831 |||| || || |||||||| |||| |||||| | || | ||||| |||||| | || Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACTT--TGGTCTCACCGG 172134059 Query 1832 CCGCGCAGCGGGACTCTTTCCAAAATAATCATCTGCCCATTCTTGCATCTCGTCGGGAAC 1891 ||| ||||||| | ||||| || ||||||||||||||||| || || | || Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 1892 GTTAGTGAA 1900 |||||||| Sbjct 172134120 ATTAGTGAA 172134128 >seq11 Length=168460249 Score = 138 bits (152), Expect = 2e-29 Identities = 259/376 (69%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 1532 ACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATGACAACTGGCTT 1591 |||| | || || ||||| |||| ||||| ||| || |||||||| | | | |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1592 GCCGTACTTGCAATTTGACTGCCATTTCTTTTGGGCCCAAAAAAGTTCTTTCCAGTGCTT 1651 |||||| ||||| | |||||||| || ||| || | || || |||||||||||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1652 TAGCTTTAGATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCGTCCGAGTA 1711 | || || || |||| | ||||| |||| ||| || || | | || ||| | Sbjct 165527490 GA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1712 CACTCTGGAATTGAAGTCTAGGTGTCCACTAAGATAATTATGTGGGCCTAATGATCGAGC 1771 ||| | ||| ||| | || |||| | || |||||| || || |||| || Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1772 CCACATCGTCTTTCCTGTTCTTGAATCACCTTCGACTATGA-----GACTTAATGGTCTT 1826 |||||| || || | ||| || |||| ||||| ||||| ||||| |||||| Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACTT--TGGTCTC 165527322 Query 1827 TCTGGCCGCGCAGCGGGACTCTT--TCCAAAATAATCATCTGCCCATTCTTGCATCTCGT 1884 ||||||||||||| || | ||||| || ||||||||||||||||| || | Sbjct 165527321 ATCGGCCGCGCAGCGG--CTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTT 165527264 Query 1885 CGGGAACGTTAGTGAA 1900 | || || |||||||| Sbjct 165527263 CTGGTACATTAGTGAA 165527248 >seq9 Length=209865144 Score = 87.8 bits (96), Expect = 3e-14 Identities = 159/226 (70%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 1117 GTCCAGACTTGGAAGTTCAGGTAGGCTTTGTGGAGATCCA-ATGCTTTCCTGAGGTTGTG 1175 ||||| | || |||||||||||| || ||||| ||||||| |||||| || |||||| Sbjct 1759649 GTCCATATTTTGAAGTTCAGGTATGCCTTGTGAAGATCCAGCTGCTTT-CTCAGGTTGCT 1759707 Query 1176 GTTGAACCGTATTTGCACGCTG-TATA-TCCTGGTGT---TCGTGAAGAGTGGGTCCTCT 1230 ||||||||||||||||| || | || ||| |||| || | | || | | | Sbjct 1759708 GTTGAACCGTATTTGCAGTTTGATGTAGTCC--GTGTCCATCATACACGGTCGTTGCAGG 1759765 Query 1231 ACCTTGTATAGTTTGAAATAAAGGGGATTTTCTATCTCCCAGATATACACGCCATTCTCC 1290 ||| | | |||||| || || |||||| |||| | ||| || || ||||| | Sbjct 1759766 TGCTTCTTGACTTTGAAGTAGAGAGGATTTGATATCCCGTAGAAGTAAACTCCATTTTGG 1759825 Query 1291 GCCTGAGGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGTCCT 1336 || || |||||||||| | | || |||| | |||||||| ||| Sbjct 1759826 GCTTGCTGTGCAGTGATTAACTTGCCGGTGCATAAATCCATGGCCT 1759871 >seq8 Length=153252196 Score = 78.8 bits (86), Expect = 2e-11 Identities = 65/77 (84%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 1117 GTCCAGACTTGGAAGTTCAGGTAGGCTTTGTGGAGATCCA-ATGCTTTCCTGAGGTTGTG 1175 ||||| | || |||||||||||| || ||||| ||||||| |||||| || |||||| Sbjct 66330004 GTCCATATTTTGAAGTTCAGGTATGCCTTGTGAAGATCCAGCTGCTTT-CTTAGGTTGCT 66330062 Query 1176 GTTGAACCGTATTTGCA 1192 ||||||||||||||||| Sbjct 66330063 GTTGAACCGTATTTGCA 66330079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8201466847024