Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_022007.1 Length=2624 Score E Sequences producing significant alignments: (Bits) Value seq13 170 3e-39 seq11 163 5e-37 seq16 161 2e-36 >seq13 Length=197258317 Score = 170 bits (188), Expect = 3e-39 Identities = 278/398 (70%), Gaps = 12/398 (3%) Strand=Plus/Plus Query 1558 CTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTTTAATTTGAACTGGTTTTCCGT 1617 ||||||| ||||| || | ||||| ||||||||| ||||| | || ||| || ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1618 ATTTGCAATTTGTTTGCCAGTTCATCTGGGCCCCAATCAACTCTTTCCAGTGCTTTAGCT 1677 ||||||| || | ||||| || || || ||||| ||||||||||||||||| | Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA-- 89851316 Query 1678 TTAGGTAGTGCGGAGCTACGTCATCAATGACGTTATACTCCACATCATTTGAATAGACCC 1737 ||| || || | || |||||| |||| ||| || || || || ||||| |||| Sbjct 89851317 ----GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1738 TAGAAT--TGAAGTCTAGGTGACCACTCAAGTAATTATGCCTACCTAGAGCACGAGCCCA 1795 | | ||| ||| | ||||||| | ||| ||||| | || | || | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1796 CATCGTCTTGCCAGTCCTCGAATCACCTTCGACGATGAT--ACTAATAGCTCTAATTGGC 1853 ||| || || || ||||| ||||||| ||| | ||| || ||| | | ||| || ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1854 CGCGCAGCGGAACCTCTTCCAAAATACTCATCAGCCCACTCTTGCATCTCGTCTGGCACG 1913 |||||||||| | |||||| || ||| ||||| | ||||| || ||||| || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1914 TTAGTGAAGGAAGAGAGTCGGAACGGAGGAACCCATGG 1951 ||||||||| || | | |||| ||| ||| |||| Sbjct 89851551 TTAGTGAAGCTTGATAATGGGAATGGACTTACCTATGG 89851588 >seq11 Length=168460249 Score = 163 bits (180), Expect = 5e-37 Identities = 297/433 (69%), Gaps = 10/433 (2%) Strand=Plus/Minus Query 1554 CCCTCTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTTTAATTTGAACTGGTTTT 1613 ||| ||||||| ||||| |||| ||||| ||||||||| ||||| | || ||| || Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1614 CCGTATTTGCAATTTGTTTGCCAGTTCATCTGGGCCCCAATCAACTCTTTCCAGTGCTTT 1673 ||||||||||| | | ||||| || || || ||||| ||||||||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1674 AGCTTTAGGTAGTGCGGAGCTACGTCATCAATGACGTTATACTCCACATCATTTGAATAG 1733 | ||| || || | || |||||| |||| ||| || || | | ||||| || Sbjct 165527489 AA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1734 ACCCTAGAATTGAAGTCTAGGTGACCACTCAAGTAATTATGCCTACCTAGAGCACGAGCC 1793 || | ||| ||| | ||||||| | ||| ||||| || || | || | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1794 CACATCGTCTTGCCAGTCCTCGAATCACCTTCGACGATGAT--ACTAATAGCTCTAATTG 1851 ||||| || |||| ||||| |||| ||||| | ||| | ||| | | ||| || | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1852 GCCGCGCAGCGGAACCTCTTCCAAAATACTCATCAGCCCACTCTTGCATCTCGTCTGGCA 1911 |||||||||||| | ||||| || ||| ||||| ||||||| || ||||| | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1912 CGTTAGTGAAGGAAGAGAGTCGGAACGGAGGAACCCATGGTTCCGGAGCCTTTTGAAAGA 1971 | ||||||||| || | |||| ||| |||||||| | | || ||| | ||| Sbjct 165527257 CATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTTCATAGA 165527198 Query 1972 GGCGATCGAGGTT 1984 | ||| ||||| Sbjct 165527197 CTCTATCCAGGTT 165527185 >seq16 Length=188620566 Score = 161 bits (178), Expect = 2e-36 Identities = 298/433 (69%), Gaps = 12/433 (3%) Strand=Plus/Minus Query 1594 CTTTAATTTGAACTGGTTTTCCGTATTTGCAATTTGTTTGCCAGTTCATCTGGGCCCCAA 1653 |||| || ||||| ||||||| ||| ||||| |||| |||||||| | || || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1654 TCAACTCTTTCCAGTGCTTTAGCTTTAGGTAGTGCGGAGCTACGTCATCAATGACGTTAT 1713 || || |||||||| |||| | || || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACAT------TGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1714 ACTCCACATCATTTGAATAGACCCTAGAATTGAAGTCTAGGTGACCACTCAAGTAATTAT 1773 | |||||||| || || | ||| ||| ||| ||||||| | |||||| || ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1774 GCCTACCTAGAGCACGAGCCCACATCGTCTTGCCAGTCCTCGAATCACCTTCGACGATGA 1833 | || || | | | |||||||| ||||| || || || ||||||||||| | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1834 T--ACTAATAGCTCTAATTGGCCGCGCAGCGGAACCTCTTCCAAAATACTCATCAGCCCA 1891 | ||| || ||| | ||| || | |||| | | |||||| ||||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1892 CTCTTGCATCTCGTCTGGCACGTTAGTGAAGGAAGAGAGTCGGAACGGAGGAACCCATGG 1951 | |||||| | | ||| ||||| ||||| ||||| | | | ||| |||||||| Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACGGCGTATGGACTTACCCATGG 2248982 Query 1952 TTCCGGAGCCTTTTGAAAGAGGCGATCGAGGTTAGGCACTAAG-TTATGGTAGTTAACAA 2010 || | || |||||| | ||| | ||| ||| ||| || ||| | |||| | Sbjct 2248981 AGCCTGTGCTGGTTGAAAAACCGTATCCA-GTTGTGCATCAAGCTTTTGGAAATTAAAGA 2248923 Query 2011 TGAACGATTTTGG 2023 ||| ||||||| Sbjct 2248922 GGAAGTATTTTGG 2248910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8287865444320