Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_022073.1 Length=2825 Score E Sequences producing significant alignments: (Bits) Value seq16 129 1e-26 >seq16 Length=188620566 Score = 129 bits (142), Expect = 1e-26 Identities = 172/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1799 CTCTGACCTGAATGGGTTTTCCGTATTTGGTGTTGCTTTGCCAATCCCTCTGGGCCCCCA 1858 || ||| ||||| ||||||| ||| ||| || |||||| || || || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1859 TAAACTCCTTGAAGTGCTTTAAATAGTGGGGGTCTACGTCATCAATGACGTTGTA--CCA 1916 || ||||| |||| |||||| | || |||| |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1917 GGCATCATTACTAAAAACCCTAGGGCTTAAATCCAGGTGTCCACACAAATAATTATGTGG 1976 |||| ||| |||||| |||| | || || | | |||| |||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1977 GCCTAATGATCTGGCCCACAATGTCTTGCCTGTTCTAGAATCTCCTTCTACTACTAT 2033 || |||||||| ||||||| |||||| || ||||| ||||| ||||| | || ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTAT 2249099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8927850790800