Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_022229.1 Length=2775 Score E Sequences producing significant alignments: (Bits) Value seq16 113 8e-22 seq13 84.2 4e-13 seq11 78.8 2e-11 >seq16 Length=188620566 Score = 113 bits (124), Expect = 8e-22 Identities = 191/269 (71%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 1724 CTTTAATTTGAATGGGCTTCCCGTACTTTGTA--TTGCTTTGCCAGTCCCTCTGGGCCCC 1781 |||| || |||| || || | |||||| | | |||||| ||||||| || || || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTT-GCACTTTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1782 CATGAATTCTTTAAAATGCTTTAAATAATGCGGGTCTACGTCATCAATGACATTGTA--C 1839 | ||||| || | || |||||| | || |||| |||| |||||| || || || | Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1840 CAGGCGTCGTTACTGTACACTTTAGGACTCAGGTCTAGATGTCCACACAAATAATTGTGT 1899 || | |||||| | | || ||||| ||| ||||| || |||| |||||||| ||| Sbjct 2249215 CA--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGT 2249158 Query 1900 GGGCCTAGAGACCTGGCCCACATTGTCTTGCCGGTCCTGCTATCACCCTCTATTACAAT- 1958 || | || || |||||||||||||| ||||| || |||||| || |||| || Sbjct 2249157 CTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATT 2249098 Query 1959 -ACTGTTGGGTCTCCATGGCCGCGCAGCG 1986 |||| |||||| |||| || | |||| Sbjct 2249097 GACTG--AGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 84.2 bits (92), Expect = 4e-13 Identities = 202/302 (67%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 1690 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTAC 1749 ||||| ||||| || | ||| || || || || ||||| | || | ||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA- 89851259 Query 1750 TTTGTA-TTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAATGCTTTAAATA 1808 |||| | || ||||| | || || || || || ||||| | ||||| || || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1809 ATGCGGGTCTACGTCATCAATGACATTGTACCAGGCGTCGTTACTGTACACTTTAGGAC- 1867 || || || |||||| |||| ||||| ||||||| | | ||||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1868 -TCAGGTCTAGATGTCCACACAAATAATTGTGTGGGCCTAGAGACCTGGCCCACATTGTC 1926 | ||||| | ||| ||||| | || || ||| || | ||| || ||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1927 TTGCCGGTCCTGCTATCACCCTCTATTACAATACTGTTGGGTCTCCATGGCCGCGCAGCG 1986 || || |||||| ||||| ||||| | || || |||||| |||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCG 89851499 Query 1987 GC 1988 || Sbjct 89851500 GC 89851501 >seq11 Length=168460249 Score = 78.8 bits (86), Expect = 2e-11 Identities = 199/300 (66%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 1690 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTAC 1749 ||||| ||||| || | ||| || || || || ||||| | || | ||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA- 165527545 Query 1750 TTTGTATTGCTT-TGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAATGCTTTAAATA 1808 |||| | | ||||| | | || || || || || ||||| | ||| | || || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1809 ATGCGGGTCTACGTCATCAATGACATTGTACCAGGCGTCGTTACTGTACACTTTAGGACT 1868 || || || |||||| |||| ||||| |||| ||| | | ||||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1869 CAGGTCTAGATGTCCACACAAATAATTGTGTGGGCCTAGAGACCTGGCCCACATTGTCTT 1928 |||| | ||| ||||| | || || ||| || | ||| || ||||||||||| || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1929 GCCGGTCCTGCTATCACCCTCTATTACAATACTGTTGGGTCTCCATGGCCGCGCAGCGGC 1988 || |||||| || ||| | ||| | | || |||||| |||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8767853464800