Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_022232.1 Length=2834 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 3e-15 >seq13 Length=197258317 Score = 91.5 bits (100), Expect = 3e-15 Identities = 205/303 (68%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 1755 CTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGT 1814 ||||||| ||||| || | ||| || || || || ||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1815 ATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGT 1874 |||| ||||| || ||||| | | || || || || || || || ||||||| | || Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1875 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAAACTTTAGGG- 1933 |||| || | |||||| |||| ||| || | | ||| | | ||||| Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1934 CTT-AGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACTGT 1992 ||| || || | ||| ||||| | || || || |||||||| || ||||| | ||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1993 TTTGCCTATTCTGCTTGGGCCTTCAATAACAATTGATATGGGTCT-ATCTGGCCGCGCAG 2051 ||| ||| | ||| | ||| || | ||||| | ||||| ||| |||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATC-GGCCGCGCAG 89851497 Query 2052 CGG 2054 ||| Sbjct 89851498 CGG 89851500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8956650309480