Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_022645.1 Length=2804 Score E Sequences producing significant alignments: (Bits) Value seq13 123 4e-25 seq11 113 8e-22 >seq13 Length=197258317 Score = 123 bits (136), Expect = 4e-25 Identities = 213/304 (70%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 1730 TCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTA 1789 |||||| ||||| || | ||| || || ||||| ||||| | || | ||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1790 CTTTGTA-TTGCTTTGCCAGTCCCTTTGGGCCCCCATAAATTCTTTGAAGTGCTTGAGGT 1848 |||| | || ||||| | ||| || || ||||| ||||| ||||||||| || Sbjct 89851260 -TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1849 AGTGTGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTGCTGTAGACCTTTGGAC 1908 | ||||| | |||||| |||| |||||| ||||||| | |||| ||| Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1909 --TAAGATCCAAATGTCCACACAAGTAGTTGTGTGGTCCCAGAGATCGGGCCCACATCGT 1966 | || |||| ||| ||||| | |||||| ||| ||||| ||||| |||||||| || Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1967 CTTCCCTGTCCTACTATCGCCTTCTAGAACAATACTGA--TCGGTCTCCATGGCCGCGCA 2024 || |||||||| ||| | ||||| | || ||| | |||||| ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTAT--TGACTTTGGTCTCATCGGCCGCGCA 89851496 Query 2025 GCGG 2028 |||| Sbjct 89851497 GCGG 89851500 >seq11 Length=168460249 Score = 113 bits (124), Expect = 8e-22 Identities = 209/302 (69%), Gaps = 6/302 (2%) Strand=Plus/Minus Query 1730 TCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTA 1789 |||||| ||||| || | ||| || || ||||| ||||| | || | ||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1790 CTTTGTATTGCTT-TGCCAGTCCCTTTGGGCCCCCATAAATTCTTTGAAGTGCTTGAGGT 1848 |||| | | ||||| | | ||| || || ||||| ||||| ||||| ||| || Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1849 AGTGTGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTGCTGTAGACCTTTGGAC 1908 | ||||| | |||||| |||| |||||| |||| ||| | |||| ||| Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1909 TAAGATCCAAATGTCCACACAAGTAGTTGTGTGGTCCCAGAGATCGGGCCCACATCGTCT 1968 | | |||| ||| ||||| | |||||| ||| ||||| ||||| |||||||| || | Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1969 TCCCTGTCCTACTATCGCCTTCTAGAACAATACTGA--TCGGTCTCCATGGCCGCGCAGC 2026 | | |||||| || |||| || | | ||| | |||||| ||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGT--TGACTTTGGTCTCATCGGCCGCGCAGC 165527308 Query 2027 GG 2028 || Sbjct 165527307 GG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8860651913880