Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_023034.1 Length=2760 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 2e-16 seq11 93.3 7e-16 >seq13 Length=197258317 Score = 95.1 bits (104), Expect = 2e-16 Identities = 205/304 (67%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1697 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1756 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1757 TTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA 1816 ||| || || ||||| | ||| || || || || ||||| ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1817 GTGGGGATCGACGTCATCAATGACGTTATACCAGACATCATTACTGTAGACCTTTGGGC- 1875 || || | |||||| |||| ||| || || || || | |||| ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1876 -TAAGGTCTAAATGACCACACAGATAATTATGTGGGCCCAGAGACCTGGCCCACATCGTC 1934 | ||||| | ||||||||| | || |||||| |||| ||| || |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1935 TTCCCAGTACGACTATCACCCCTCATGACTAT--ACTTACAGGTCTCAAAGGCCGCGCAG 1992 || || || | ||||| |||| ||| |||| ||||||| |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAG 89851497 Query 1993 CGGC 1996 |||| Sbjct 89851498 CGGC 89851501 Score = 86.0 bits (94), Expect = 1e-13 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 2243 TCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTC 2302 ||| | |||| |||||| |||||||| |||||||||| || ||||| |||| Sbjct 172134321 TCTGGTAGATGTTCCATGTTTCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTCTG 172134380 Query 2303 CAGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGC 2362 || || |||| | || |||||||| ||| |||| |||||| || | | Sbjct 172134381 CATGTATCTTCTGACAAAGAAACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTC 172134440 Query 2363 TGCCCTGGTTGGGGAAACCAGGTCGAAGAATCTGTTATTTTGGCACTTGTACTTTCCTTC 2422 | | | ||||| | ||||| |||||||| |||||| || ||| | || ||| Sbjct 172134441 AGACGTATTTGGGTGATTGAGGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTTC 172134500 Query 2423 GAACTGGATGAGCACGTGAAGATGAGGTTCCCCATCTTCGTGGAGTTCTCTGCAGAT 2479 | ||| || | || ||||||||||| | | |||||||| |||||| ||||||| Sbjct 172134501 CATCTGCATCAAAACATGAAGATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGAT 172134557 Score = 82.4 bits (90), Expect = 1e-12 Identities = 155/227 (68%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 2255 TCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTT 2314 ||||| |||||||| ||||||||||| |||| ||||| || | || ||| | Sbjct 89851763 TCCATGTTTCTGAAACGTTCCCCAGTCGATTATGTCACCGTCTTTTTGCATATATCTTCT 89851822 Query 2315 GACGTCTGAGCTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGCCCTGGTTGG 2374 |||| | || |||||||| ||| || |||||||| || | | | | | |||| Sbjct 89851823 GACGAAGAAACTGGATTTAGCAGACTGTATATTTGGATGACAAACTTCAGACATATTTGG 89851882 Query 2375 GGAAACCAGGTCGAAGAATCTGTTATTTTGGCACTT--GTACTTTCCTTCGAACTGGATG 2432 | | | ||| |||||||| |||||| || || | ||| ||| | ||| || Sbjct 89851883 GTGATTGATGTCAAAGAATCTTGGATTTTGACATTTCAATTTTTTTTTTCAATCTGCATC 89851942 Query 2433 AGCACGTGAAGATGAGGTTCCCCATCTTCGTGGAGTTCTCTGCAGAT 2479 | || || |||||||||| | |||||||| | |||||||||||| Sbjct 89851943 AAAACATGTAGATGAGGTTTACTGTCTTCGTGCAATTCTCTGCAGAT 89851989 >seq11 Length=168460249 Score = 93.3 bits (102), Expect = 7e-16 Identities = 205/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 1697 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1756 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1757 TTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA 1816 ||| | || ||||| | | ||| || || || || ||||| ||||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1817 GTGGGGATCGACGTCATCAATGACGTTATAC-CAGACATCATTACTGTAGACCTTTGGGC 1875 || || | |||||| |||| ||| || ||| | | || | |||| ||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAG-CGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1876 TAAGGTCTAAATGACCACACAGATAATTATGTGGGCCCAGAGACCTGGCCCACATCGTCT 1935 | |||| | ||||||||| | || |||||| |||| ||| || |||||||| || | Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1936 TCCCAGTACGACTATCACCCCTCATGACTAT--ACTTACAGGTCTCAAAGGCCGCGCAGC 1993 | | || | || ||| | |||| | | |||| ||||||| ||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGC 165527308 Query 1994 GGC 1996 ||| Sbjct 165527307 GGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8723058378848