Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_023849.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq16 107 3e-20 seq11 87.8 3e-14 seq13 84.2 4e-13 >seq16 Length=188620566 Score = 107 bits (118), Expect = 3e-20 Identities = 182/258 (71%), Gaps = 7/258 (3%) Strand=Plus/Minus Query 1729 CTTTAATTTGAATGGGTTTCCCATATTT-CGTGTTGCTTTGCCAGTCTCTCTGGGCCCCC 1787 |||| || |||| ||||| | || || | |||||| |||||||||| || || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1788 ATAAATTCCTTGAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTATA--CC 1845 | |||||||| |||| |||| | | || || | ||||| |||||| |||||||| || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1846 AAGCATTATTGCTATATACTCTTGGGCTGAGATCGAGATGCCCACATAAATAATTATGTG 1905 | ||| || | || | || | | || | || |||| ||||||||||||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1906 GCCCTAATGACCTAGCCCACATTGTTTTACCTGTTCGACTATGCCCTTCAATTACAATTG 1965 || ||||| || ||||||||||| || || |||| || |||||||||| |||| Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTG 2249097 Query 1966 ATTTAGGTCT-AATAGGC 1982 | | |||||| ||| ||| Sbjct 2249096 ACTGAGGTCTCAATGGGC 2249079 >seq11 Length=168460249 Score = 87.8 bits (96), Expect = 3e-14 Identities = 198/298 (66%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 1695 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGTTTCCCATAT 1754 ||||| ||||| || | ||| || || || || ||||| | || | || || || ||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1755 TTCGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTGAAGTGCTTTAGATAG 1814 || || ||||| | || || || || ||||| || || ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1815 TGGGGATCAACGTCATCAATGACGTTATACCAAGCATTATTGCTATATACTCTTGGGCTG 1874 || || | |||||| |||| ||| || ||| || || | ||| || | || Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1875 AGATCGAGATGCCCACATAAATAATTATGTGGCCCTAATGACCTAGCCCACATTGTTTTA 1934 | || | ||| ||||||| || |||||| || || || || |||||||||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1935 CCTGTTCGACTATGCCCTTCAATTACAATTGATTTAGGTCTAATAGGCCGCGCAGCGG 1992 | ||| | || |||| || | |||| || ||||| || ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 >seq13 Length=197258317 Score = 84.2 bits (92), Expect = 4e-13 Identities = 199/300 (66%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 1695 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGTTTCCCATAT 1754 ||||| ||||| || | ||| || || || || ||||| | || | || || | ||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1755 TTCGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTGAAGTGCTTTAGATAG 1814 || ||| ||||| | | || || || ||||| || || ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1815 TGGGGATCAACGTCATCAATGACGTTATACCAAGCATTATTGCTATATACTCTTGGGC-- 1872 || || | |||||| |||| ||| || | | | || | ||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1873 TGAGATCGAGATGCCCACATAAATAATTATGTGGCCCTAATGACCTAGCCCACATTGTTT 1932 |||| || | ||| ||||||| || |||||| || || || || ||||||||||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1933 TACCTGTTCGACTATGCCCTTCAATTACAATTGATTTAGGTCTAATAGGCCGCGCAGCGG 1992 ||||||| | || | ||| || | ||||| || ||||| || ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8604660301072