Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_024009.1 Length=2772 Score E Sequences producing significant alignments: (Bits) Value seq13 118 2e-23 seq11 113 8e-22 seq16 98.7 2e-17 >seq13 Length=197258317 Score = 118 bits (130), Expect = 2e-23 Identities = 209/302 (69%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 1694 CCAGGATTGCATAGGAAGATAGTGGGAATGCCCCCTTTAATTTGAACTGGCTTCCCGTAC 1753 || || |||||||| | ||| || || ||||| ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1754 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTAG 1813 ||| ||| ||||| | ||| || || || |||||||| ||||||| | ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1814 TGGGGGTCTACGTCATCAATGACGTTGTACCAGGAGGCATTTGAATAGA--TTTTAGGGC 1871 || || || |||||| |||| |||||| | | ||||| ||| |||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1872 TCAGATCTAAATGGCCACATAAGTAATTATGTGGTCCCAAAGACCTGGCCCACATAGTCT 1931 | || || | ||| ||||||| ||| |||||| ||||||||| || |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1932 GGCCCGTACGACTATCACCCTCGATGACGAT--ACTTTTAGGTCTCAATGGCCGCGCAGC 1989 || || | ||||| || |||| || ||||| ||||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 1990 GG 1991 || Sbjct 89851499 GG 89851500 >seq11 Length=168460249 Score = 113 bits (124), Expect = 8e-22 Identities = 206/300 (69%), Gaps = 4/300 (1%) Strand=Plus/Minus Query 1694 CCAGGATTGCATAGGAAGATAGTGGGAATGCCCCCTTTAATTTGAACTGGCTTCCCGTAC 1753 || || |||||||| | ||| || || ||||| ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1754 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTAG 1813 ||| || ||||| | | ||| || || || |||||||| ||||| | | ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1814 TGGGGGTCTACGTCATCAATGACGTTGTACCAGGAGGCATTTGAATAGATTTTAGGGCTC 1873 || || || |||||| |||| |||||| | | ||||| ||| ||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1874 AGATCTAAATGGCCACATAAGTAATTATGTGGTCCCAAAGACCTGGCCCACATAGTCTGG 1933 | || | ||| ||||||| ||| |||||| ||||||||| || |||||||| || | | Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1934 CCCGTACGACTATCACCCTCGATGACGAT--ACTTTTAGGTCTCAATGGCCGCGCAGCGG 1991 | || | || ||| | |||| | ||||| ||||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 >seq16 Length=188620566 Score = 98.7 bits (108), Expect = 2e-17 Identities = 182/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1728 CTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1787 |||| || ||||| || || | ||||||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1788 TGAACTCTTTAAAGTGCTTTAGGTAGTGGGGGTCTACGTCATCAATGACGTTGTA--CCA 1845 || || || |||| |||| | || |||| |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1846 GGAGGCATTTGAATAGATTTTAGGGCTCAGATCTAAATGGCCACATAAGTAATTATGTGG 1905 | || || | | |||| ||| ||||||| |||| ||| ||||||||| Sbjct 2249213 CATCG--TTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1906 TCCCAAAGACCTGGCCCACATAGTCTGGCCCGTACGACTATCACCCTCGATGACGATACT 1965 |||||| || || |||||||| |||| || || | |||||| || || | || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1966 TTTAGGTCTCAATGGCCGCGCAGCG 1990 | |||||||||||| || | |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCG 2249071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8758253625240