Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_024012.1 Length=2610 Score E Sequences producing significant alignments: (Bits) Value seq16 168 1e-38 seq13 167 4e-38 seq11 163 5e-37 >seq16 Length=188620566 Score = 168 bits (186), Expect = 1e-38 Identities = 241/336 (72%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1575 CTTTAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGtttttttGGGCCCCCA 1634 |||| || ||||| || |||| ||| ||||| |||| ||||||| | |||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1635 GCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1694 | ||||| |||||||| |||| | || ||| | | |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1695 ACTCCACGTCGTTTGAGTAGACCCGGTGATTGAAGTCTAAGTGTCCACTGAGATAGTTAT 1754 | ||||| ||||| ||| | ||| |||| |||||||| | ||||| | ||| |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1755 GTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTCCGTGAATCACCTTCGACTATGA 1814 || || || | | |||||||| ||||| || || | |||||||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1815 --CACTTATAGGTCTCTCCGGCCGCGCAGCGGAACCCCTTCCAAAATAATCATCCGCCCA 1872 ||| ||||||| || || | |||| | | |||||||||||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1873 TTCTTGCATCTCGTCCGGAACGTTAGTGAAAGAGGA 1908 || |||||| | | || ||||| |||||||| || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 167 bits (184), Expect = 4e-38 Identities = 259/366 (71%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1541 CCAGGATTGCAGAGCACGATTGCTGGGATGCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1600 || || ||||| || | ||||| ||| ||||| ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1601 TTGCAATTTGACTGCCAGtttttttGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1660 ||||| || |||||||| |||| ||| || || | || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1661 AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACGTCGTTTGAGTAGAC--CC 1718 || || || |||| | |||||| |||| ||| || || |||||||||||| |||| Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1719 GGTGATTGAAGTCTAAGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGAGCCCACA 1778 | |||| ||| | || |||| | ||||||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1779 TCGTCTTCCCTGTCCGTGAATCACCTTCGACTATGA--CACTTATAGGTCTCTCCGGCCG 1836 | || || ||||||| ||||||| ||| | || | ||| | |||||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1837 CGCAGCGGAACCCCTTCCAAAATAATCATCCGCCCATTCTTGCATCTCGTCCGGAACGTT 1896 |||||||| |||||| || ||| ||||||| ||||| || || || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1897 AGTGAA 1902 |||||| Sbjct 89851553 AGTGAA 89851558 Score = 111 bits (122), Expect = 3e-21 Identities = 243/361 (67%), Gaps = 5/361 (1%) Strand=Plus/Plus Query 1656 GCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACGTCGTTTGAGTAGA 1715 |||| | || || |||| | |||||| |||| ||| || || ||| ||||||| ||| Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1716 CCCGGTGATTGAAGTCTAAGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGAGCCC 1775 | | |||| ||| || || |||| | ||||||||| || | | | |||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1776 ACATCGTCTTCCCTGTCCGTGAATCACCTTCGACTATGAC--ACTTATAGGTCTCTCCGG 1833 |||| || || ||||| | |||| |||||| | || || |||| |||||| |||| Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACTTT--GGTCTCACCGG 172134059 Query 1834 CCGCGCAGCGGAACCCCTTCCAAAATAATCATCCGCCCATTCTTGCATCTCGTCCGGAAC 1893 ||| ||||||| | ||||| || ||| ||||||||||||| || || | || Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 1894 GTTAGTGAAAGAGGAGAGTGGAAACGGAGGGACCCACGGTTCCGGAGCCTTTGCGAATAT 1953 |||||||| || | || || ||| ||||| || | | || || | | | Sbjct 172134120 ATTAGTGAAGCTTGATAACGGGAATGGACATACCCATGGAGCTGTAGGTATTTCATAGAC 172134179 Query 1954 TCTTTCGAGATTGGAGCGGATGTTATGATTCTGCAAGACGAAATCTTTTGGCTGTTCTTC 2013 ||| || || ||| || |||||| |||| ||| |||| || ||| | || ||||| || Sbjct 172134180 TCTATCCAGGTTGAAGTTGATGTTGTGATGCTGTAAGAGAAAGTCTCTGGGTTGTTCATC 172134239 Query 2014 T 2014 | Sbjct 172134240 T 172134240 >seq11 Length=168460249 Score = 163 bits (180), Expect = 5e-37 Identities = 328/484 (68%), Gaps = 12/484 (2%) Strand=Plus/Minus Query 1534 ACCCTCACCAGGATTGCAGAGCACGATTGCTGGGATGCCGCCTTTAATTTGAACTGGCTT 1593 |||| | || || ||||| |||| ||||| ||| ||||| ||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1594 TCCGTATTTGCAATTTGACTGCCAGtttttttGGGCCCCCAGCAATTCTTTCCAGTGCTT 1653 ||||||||||| | |||||||| ||| ||| || || | || |||||||||||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1654 TAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACGTCGTTTGAGTA 1713 | || || || |||| | |||||| |||| ||| || || ||| ||||||| | Sbjct 165527490 GA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1714 GACCCGGTGATTGAAGTCTAAGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGAGC 1773 ||| | ||| ||| | || |||| | ||||||||| || || | | || Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1774 CCACATCGTCTTCCCTGTCCGTGAATCACCTTCGACTATGACACTT---ATAGGTCTCTC 1830 |||||| || || | ||||| |||| ||||| ||||| || | |||||| Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACTTTGGTCTCAT 165527320 Query 1831 CGGCCGCGCAGCGGAACCCCTTCCAAAATAATCATCCGCCCATTCTTGCATCTCGTCCGG 1890 |||||||||||||| ||||| || ||| ||||||||||||| || || || Sbjct 165527319 CGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGG 165527260 Query 1891 AACGTTAGTGAAAGAGGAGAGTGGAAACGGAGGGACCCACGGTTCCGGAGCCTTTGCGAA 1950 || |||||||| || | || || ||| ||||| || | | || || | | Sbjct 165527259 TACATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTTCATA 165527200 Query 1951 TATTCTTTCGAGATTGGAGCGGATGTTATGATTCTGCAAGACGAAATCTTTTGGCTGTTC 2010 | ||| || || ||| || |||||| |||| ||| || | || ||| | || ||||| Sbjct 165527199 GACTCTATCCAGGTTGTAGTTGATGTTGTGATGCTGTAACAGAAAGTCTCTGGGTTGTTC 165527140 Query 2011 TTCT 2014 ||| Sbjct 165527139 ATCT 165527136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8243066171648