Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_024116.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq16 132 8e-28 seq11 104 4e-19 seq13 102 1e-18 >seq16 Length=188620566 Score = 132 bits (146), Expect = 8e-28 Identities = 192/267 (72%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1729 CTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCA 1788 |||| || ||||| || |||| |||||| |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1789 TGAATTCCTTAAAGTGCTTTAGGTAATGGGGATCTACGTCATCGATGACGTTATA--CCA 1846 |||||||| |||| |||| | || || | |||| ||| || |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1847 GGCATCATTATTGTAGACCTTTGGGCTAAGGTCTAGATGTCCACACAAATAATTATGTGG 1906 |||| ||| | | ||| | || | | ||||| || |||| |||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1907 TCCGAGTGATCTTGCCCACATGGTCTTGCCCGTTCTACTATCACCCTCTATGACAAT--A 1964 ||| | ||||||||||||||| ||||| || ||||| |||||| || || | || | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1965 CTTATGGGCCTCAAAGGCCGCGCAGCG 1991 || | || ||||| || || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 104 bits (114), Expect = 4e-19 Identities = 210/306 (69%), Gaps = 12/306 (4%) Strand=Plus/Minus Query 1694 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1753 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1754 CTTTGTATTT-GATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGT 1812 |||| | | || ||||| | | ||| || || || || || || ||||| | | || Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1813 AATGGGGATCTACGTCATCGATGACGTTATACCAGGCATCATTATT---GTAGACCTTTG 1869 | || || || ||||||||||| ||| || | || | || || | |||| ||| Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGAGAAGACTTTTT 165527429 Query 1870 GGCTAAGGTCTAGATGTCCACACAAATAATTATGTGGTCCGAGTGATCTTGCCCACATGG 1929 | | |||| | ||| ||||| | || |||||| ||| | |||||||||||||| | Sbjct 165527428 TGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTG 165527369 Query 1930 TCTTGCCCGTTCTACTATCACCCTCTATGACAAT--ACTTATGGGCCTCAAAGGCCGCGC 1987 | |||| || || || ||| | ||||| | ||| | || |||| |||||||| Sbjct 165527368 TTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGC 165527311 Query 1988 AGCGGC 1993 |||||| Sbjct 165527310 AGCGGC 165527305 >seq13 Length=197258317 Score = 102 bits (112), Expect = 1e-18 Identities = 209/305 (69%), Gaps = 8/305 (3%) Strand=Plus/Plus Query 1694 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1753 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1754 CTTTGTATTT-GATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGT 1812 |||| | || || ||||| | ||| || || || || || || ||||||| | || Sbjct 89851260 -TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1813 AATGGGGATCTACGTCATCGATGACGTTATACCAGGCATCATTATTGTAGACCTTTGGGC 1872 | || || || ||||||||||| ||| || | || || | |||| ||| Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1873 --TAAGGTCTAGATGTCCACACAAATAATTATGTGGTCCGAGTGATCTTGCCCACATGGT 1930 | ||||| | ||| ||||| | || |||||| ||| | |||||||||||||| || Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1931 CTTGCCCGTTCTACTATCACCCTCTATGACAAT--ACTTATGGGCCTCAAAGGCCGCGCA 1988 || || || || ||||| ||||||| || ||| | || |||| ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCA 89851496 Query 1989 GCGGC 1993 ||||| Sbjct 89851497 GCGGC 89851501 Score = 82.4 bits (90), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 11/197 (6%) Strand=Plus/Plus Query 1802 GTGCTTTAGGTAATGGGGATCTACGTCATCGATGACGTTATACCAGGCATCATTATT--- 1858 |||||| | ||| || || || ||||||||||| ||| || | || | || || Sbjct 172133881 GTGCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGA 172133937 Query 1859 GTAGACCTTTGGGCTAAGGTCTAGATGTCCACACAAATAATTATGTGGTCCGAGTGATCT 1918 | |||| ||| | | ||||| | || ||||| | || |||||| ||| | ||||| Sbjct 172133938 GAAGACTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCT 172133996 Query 1919 TGCCCACATGGTCTTGCCCGTTCTACTATCACCCTCTATGACAATACTTA--TGGGCCTC 1976 ||||||||| || ||||| ||||| || ||| |||||| | |||| | | || ||| Sbjct 172133997 TGCCCACATTGTTTTGCCTGTTCTGGAATTACCTTCTATG--ATTACTGACTTTGGTCTC 172134054 Query 1977 AAAGGCCGCGCAGCGGC 1993 | ||||| |||||||| Sbjct 172134055 ACCGGCCGTGCAGCGGC 172134071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700658742512