Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_024304.1 Length=2602 Score E Sequences producing significant alignments: (Bits) Value seq16 161 2e-36 seq13 125 1e-25 seq11 125 1e-25 >seq16 Length=188620566 Score = 161 bits (178), Expect = 2e-36 Identities = 255/361 (71%), Gaps = 12/361 (3%) Strand=Plus/Minus Query 1580 CTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTGGATTGCCAGTCCTTTTGGGCCCCAA 1639 |||| || ||||| || |||| ||| ||||| || | ||||||||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1640 TTAACTCTTTCCAGTGTTTCATCTTTAGATAATGCGGGCTGACATCATCTATGACATTAT 1699 ||| || ||||||||||| || | | || ||| | || | ||| || || |||| Sbjct 2249273 GTAATTCCTTCCAGTGTTT------TAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1700 ATTCAGCTTTATTTGAATAAACTCTGGAATTAAAATCAAGATGTCCGCTCAAATAATTAT 1759 |||| | | || || |||| | | ||| || || | || || || |||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1760 GTGGGCCTAATGCTCGAGCCCACATCGTCTTCCCCGTTCGACTATCACCTTCAATGATAA 1819 || || |||| || |||||||| ||||| || |||| |||||||||||| || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1820 T--ACTAATAGGTCTCTCTGGCCGCGCAGCGGAATCCTTTCCAAAATAATCATCAGCCCA 1877 | ||| | |||||| ||| || | |||| || | |||||||||||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1878 TTCCTGCATCTCGTCAGGCACGTTAGTGAAAGATGAGA-GTCGAAAAGGAGATACCCATG 1936 || ||||| | | || ||||| |||||||| || | | || | ||| |||||||| Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACGGCG-TATGGACTTACCCATG 2248983 Query 1937 G 1937 | Sbjct 2248982 G 2248982 >seq13 Length=197258317 Score = 125 bits (138), Expect = 1e-25 Identities = 268/398 (67%), Gaps = 12/398 (3%) Strand=Plus/Plus Query 1544 CTCCTGGATTGCACAGCACAATTGATGGGATGCCTCCTTTAATTTGAACTGGCTTTCCGT 1603 ||||||| ||||| || | |||| ||| ||||||||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1604 ATTTGCAGTTGGATTGCCAGTCCTTTTGGGCCCCAATTAACTCTTTCCAGTGTTTCATCT 1663 |||||||||| || ||||| | | ||| || ||||| |||||||||||||| || Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTG------CT 89851312 Query 1664 TTAGATAATGCGGGCTGACATCATCTATGACATTATATTCAGCTTTATTTGAATAAAC-- 1721 | | || || || | ||||| |||| || || ||| | | ||||| | || Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1722 TCTGGAATTAAAATCAAGATGTCCGCTCAAATAATTATGTGGGCCTAATGCTCGAGCCCA 1781 | | || | || | ||| || | | || |||||| || || | || ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1782 CATCGTCTTCCCCGTTCGACTATCACCTTCAATGATAAT--ACTAATAGGTCTCTCTGGC 1839 ||| || || || || | ||||| ||| ||||| || ||| | |||||| ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1840 CGCGCAGCGGAATCCTTTCCAAAATAATCATCAGCCCATTCCTGCATCTCGTCAGGCACG 1899 |||||||||| | |||||| || ||| ||||||| |||| || || || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1900 TTAGTGAAAGATGAGAGTCGAAAAGGAGATACCCATGG 1937 |||||||| ||| | | | || ||| |||| |||| Sbjct 89851551 TTAGTGAAGCTTGATAATGGGAATGGACTTACCTATGG 89851588 >seq11 Length=168460249 Score = 125 bits (138), Expect = 1e-25 Identities = 274/409 (67%), Gaps = 10/409 (2%) Strand=Plus/Minus Query 1540 CCCTCTCCTGGATTGCACAGCACAATTGATGGGATGCCTCCTTTAATTTGAACTGGCTTT 1599 ||| ||||||| ||||| |||| |||| ||| ||||||||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1600 CCGTATTTGCAGTTGGATTGCCAGTCCTTTTGGGCCCCAATTAACTCTTTCCAGTGTTTC 1659 ||||||||||||| || ||||| | ||| || ||||| |||||||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG---- 165527494 Query 1660 ATCTTTAGATAATGCGGGCTGACATCATCTATGACATTATATTCAGCTTTATTTGAATAA 1719 | | | || || || | ||||| |||| || || ||||| || ||||| | Sbjct 165527493 --CATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1720 ACTCTGGAATTAAAATCAAGATGTCCGCTCAAATAATTATGTGGGCCTAATGCTCGAGCC 1779 ||| | || || | ||| || | | || |||||| || || | || ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1780 CACATCGTCTTCCCCGTTCGACTATCACCTTCAATGATAAT--ACTAATAGGTCTCTCTG 1837 ||||| || || | || | || ||||| ||||| | ||| | |||||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1838 GCCGCGCAGCGGAATCCTTTCCAAAATAATCATCAGCCCATTCCTGCATCTCGTCAGGCA 1897 |||||||||||| | ||||| || ||| |||||||| |||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1898 CGTTAGTGAAAGATGAGAGTCGAAAAGGAGATACCCATGGTTCTGGAGG 1946 | |||||||| ||| | | || ||| ||||||||| ||| ||| Sbjct 165527257 CATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGG 165527209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8217466587264