Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_024491.1 Length=2778 Score E Sequences producing significant alignments: (Bits) Value seq13 89.7 9e-15 >seq13 Length=197258317 Score = 89.7 bits (98), Expect = 9e-15 Identities = 205/304 (67%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1720 TCCTGGATTGCAGAGGAAGATAGTTGGAATCCCGCCTTTAATTTGAACTGGCTTTCCGTA 1779 |||||| ||||| || | ||| ||||| || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1780 TTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1839 ||| ||| ||||| | ||| || || || || || || ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1840 GTGGGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTAGA-TCTTTGGGC 1898 || || | |||||| |||| |||||| | || || | ||| | ||| | Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1899 TTAAG-TCCAGATGACCACACAGATAATTATGTGGACCCAGTGACCTAGCCCACATCGTC 1957 || || |||| ||||||||| | || |||||| |||| || || |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1958 TTCCCTGTCCGACTGTCACCCTCAATCACTAT--ACTTATGGGCCTGAAAGGCCGCGCAG 2015 || ||||||| |||| || || | ||| |||| || || | |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAG 89851497 Query 2016 CGGC 2019 |||| Sbjct 89851498 CGGC 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8777453304360