Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_024687.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq16 107 3e-20 seq13 107 3e-20 seq11 98.7 2e-17 >seq16 Length=188620566 Score = 107 bits (118), Expect = 3e-20 Identities = 184/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1753 CTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTACTTTGCCAGTCCCTCTGGGCCCCCA 1812 |||| || ||||| || || | ||||||| || ||||||||| || || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1813 TGATTTCTTTAAAGTGCTTTAGGTAGTTGGGGTCTACGTCATCAATGACGTTGTA--CCA 1870 | ||| || |||| |||| | | |||| |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1871 TGCATCATTTGAATAGATCTTAGGGCTCAGATCTAAATGGCCACATAGGTAATTATGTGG 1930 |||| || || | | | |||| ||| ||||||| |||| || ||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1931 ACCCAGTGACCTAGCCCACATTGTTTTCCCCGTACGCCTATCACCCTCAATGACGATACT 1990 |||| ||| || ||||||||||| || || || | |||||| ||||| | || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1991 TTTAGGTCTCAATGGCCGCGCAGCG 2015 | |||||||||||| || | |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 107 bits (118), Expect = 3e-20 Identities = 209/303 (69%), Gaps = 8/303 (3%) Strand=Plus/Plus Query 1719 CCAGGATTGCATAGGAAGATCGTGGGAATGCCCCCTTTAATTTGAACTGGCTTCCCGTAC 1778 || || |||||||| | ||| || || ||||| ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1779 TTGGTGTTACTTTGCCAGTCCCTCTGGGCCCCCATGATTTCTTTAAAGTGCTTTAGGTAG 1838 ||| |||| ||||| | || || || || | ||||| ||||||| | ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA- 89851319 Query 1839 TTGGGGTC-TACGTCATCAATGACGTTGTACCATGCATCATTTGAATAGA--TCTTAGGG 1895 ||| ||| || |||||| |||| |||||| | || ||||| ||| | || Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1896 CTCAGATCTAAATGGCCACATAGGTAATTATGTGGACCCAGTGACCTAGCCCACATTGTT 1955 | || || | ||| ||||||| ||| |||||| |||| || || |||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1956 TTCCCCGTACGCCTATCACCCTCAATGACGAT--ACTTTTAGGTCTCAATGGCCGCGCAG 2013 || || || | ||||| || |||| || ||||| ||||||| |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAG 89851497 Query 2014 CGG 2016 ||| Sbjct 89851498 CGG 89851500 >seq11 Length=168460249 Score = 98.7 bits (108), Expect = 2e-17 Identities = 205/301 (68%), Gaps = 6/301 (2%) Strand=Plus/Minus Query 1719 CCAGGATTGCATAGGAAGATCGTGGGAATGCCCCCTTTAATTTGAACTGGCTTCCCGTAC 1778 || || |||||||| | ||| || || ||||| ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1779 TTGGTGTTACTTTGCCAGTCCCTCTGGGCCCCCATGATTTCTTTAAAGTGCTTTAGGTAG 1838 ||| || | ||||| | | || || || || | ||||| ||||| | | ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA- 165527485 Query 1839 TTGGGGTC-TACGTCATCAATGACGTTGTACCATGCATCATTTGAATAGATCTTAGGGCT 1897 ||| ||| || |||||| |||| |||||| || | ||||| ||| || | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1898 CAGATCTAAATGGCCACATAGGTAATTATGTGGACCCAGTGACCTAGCCCACATTGTTTT 1957 | || | ||| ||||||| ||| |||||| |||| || || |||||||||||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1958 CCCCGTACGCCTATCACCCTCAATGACGAT--ACTTTTAGGTCTCAATGGCCGCGCAGCG 2015 | || | || ||| | |||| | ||||| ||||||| |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCG 165527307 Query 2016 G 2016 | Sbjct 165527306 G 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8662259365936