Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_024693.1 Length=2831 Score E Sequences producing significant alignments: (Bits) Value seq16 82.4 1e-12 >seq16 Length=188620566 Score = 82.4 bits (90), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 1789 CTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCTCTCTGGGCCCCAA 1848 |||| || ||||| || || | |||||| || | |||||||||||| || || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1849 TGAATTCTTTAAAGTGCTTTAGGTATTGGGGGTCGACGTCATCAATGACGTTGTA--CCA 1906 ||||| || |||| |||| |||| |||| |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1907 AGCACTGTTGCTGTACACTCTTGGACTCAGGTCCAAGTGCCCACACAGATAATTATGTGG 1966 || ||| | | || | ||| ||| ||| || | |||| | |||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1967 GCCTAAAGACCGAGCCCAAACTGTTTTACCTATTCT 2002 || || || | ||||| | ||| || || |||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCT 2249120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8947050469920