Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_024810.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 3e-15 seq11 77.0 6e-11 >seq13 Length=197258317 Score = 91.5 bits (100), Expect = 3e-15 Identities = 203/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 1665 CCAGGATTGCAGAGGAAGATAGTGGGTATACCTCCTTTAATCATGACT-GGCTTTCCGTA 1723 || || ||||| || | ||| || ||||| |||||||| | || |||| ||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGA-CAAGACTTGGCTTGTCGTA 89851259 Query 1724 TTTTGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGTTTCAAGTA 1783 ||| ||| ||||| | | || || || || || ||||| |||| || ||||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1784 GTGCGGGTCGACGTCGTCAATGACGTTGTACCAAGCATCGTTACTGTAGA--TCTTGGGG 1841 || || | ||| || |||| |||||| | | ||||| | ||| | || Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1842 CTCAGGTCCAGATGGCCGCACAAGTAATTGTGCGGTCCTAAAGAACGTGCCCACATCGTC 1901 | ||||||| ||| || || | ||| || || ||| ||||| | ||||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1902 TTCCCCGTCCTACTATCACCCTCTAAAACAATACCTATGGGCCTCACTGGCCGCGCAGCG 1961 || || ||||| ||||| |||| | || | || |||| |||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCG 89851499 Query 1962 G 1962 | Sbjct 89851500 G 89851500 >seq11 Length=168460249 Score = 77.0 bits (84), Expect = 6e-11 Identities = 198/299 (66%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 1665 CCAGGATTGCAGAGGAAGATAGTGGGTATACCTCCTTTAATCATGACT-GGCTTTCCGTA 1723 || || ||||| || | ||| || ||||| |||||||| | | |||| ||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAA-GACTTGGCTTGCCGTA 165527545 Query 1724 TTTTGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGTTTCAAGTA 1783 ||| || ||||| | || || || || || || ||||| |||| | ||||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1784 GTGCGGGTCGACGTCGTCAATGACGTTGTACCAAGCATCGTTACTGTAGATCTTGGGGCT 1843 || || | ||| || |||| |||||| ||| | ||| | ||| || | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1844 CAGGTCCAGATGGCCGCACAAGTAATTGTGCGGTCCTAAAGAACGTGCCCACATCGTCTT 1903 |||||| ||| || || | ||| || || ||| ||||| | ||||||||| || || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1904 CCCCGTCCTACTATCACCCTCTAAAACAATACCTATGGGCCTCACTGGCCGCGCAGCGG 1962 | ||||| || ||| | || | | | || |||| ||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8687858950320